Variant report

Variant	rs10210416
Chromosome Location	chr2:78098887-78098888
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LRRTM4-8	chr2:78098667-78099271	ucscGeneNc_uc002snu_2

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10171058	0.85[EUR][1000 genomes]
rs10171354	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10172992	0.85[EUR][1000 genomes]
rs10177577	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10180629	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10180778	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10183724	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10187045	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10189854	0.82[EUR][1000 genomes]
rs10190419	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10194681	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10194687	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10194769	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10197479	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10198017	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10200610	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10204187	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10204293	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10205106	0.85[EUR][1000 genomes]
rs11126637	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11126638	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11126639	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13388014	1.00[ASN][1000 genomes]
rs13388217	1.00[ASN][1000 genomes]
rs13389716	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13398826	0.85[EUR][1000 genomes]
rs13407633	0.85[EUR][1000 genomes]
rs13413424	1.00[ASN][1000 genomes]
rs13413439	1.00[ASN][1000 genomes]
rs13413512	1.00[ASN][1000 genomes]
rs13413777	1.00[ASN][1000 genomes]
rs13413832	1.00[ASN][1000 genomes]
rs13414834	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13414909	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13426866	1.00[ASN][1000 genomes]
rs13432504	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1594701	0.85[EUR][1000 genomes]
rs1594702	0.85[EUR][1000 genomes]
rs1594703	0.85[EUR][1000 genomes]
rs17014637	0.82[EUR][1000 genomes]
rs17014676	0.92[EUR][1000 genomes]
rs17014678	0.92[EUR][1000 genomes]
rs28641860	0.88[EUR][1000 genomes]
rs56839384	0.85[EUR][1000 genomes]
rs57246327	0.85[EUR][1000 genomes]
rs57523484	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57661886	0.85[EUR][1000 genomes]
rs58973365	0.81[EUR][1000 genomes]
rs60150936	0.85[EUR][1000 genomes]
rs60718033	0.82[EUR][1000 genomes]
rs61125183	0.82[EUR][1000 genomes]
rs61144368	0.82[EUR][1000 genomes]
rs72911945	0.82[EUR][1000 genomes]
rs72911948	0.82[EUR][1000 genomes]
rs72911955	0.81[EUR][1000 genomes]
rs72911961	0.81[EUR][1000 genomes]
rs72911963	0.85[EUR][1000 genomes]
rs72911969	0.85[EUR][1000 genomes]
rs72911977	0.85[EUR][1000 genomes]
rs72911981	0.85[EUR][1000 genomes]
rs72911986	0.85[EUR][1000 genomes]
rs72911989	0.85[EUR][1000 genomes]
rs72911992	0.81[EUR][1000 genomes]
rs72913806	0.81[EUR][1000 genomes]
rs72913812	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs72913813	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72913815	0.81[EUR][1000 genomes]
rs72913843	0.96[EUR][1000 genomes]
rs72913844	0.96[EUR][1000 genomes]
rs73941497	0.82[EUR][1000 genomes]
rs73941501	0.85[EUR][1000 genomes]
rs73943546	1.00[ASN][1000 genomes]
rs73943551	1.00[ASN][1000 genomes]
rs73943552	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518504	chr2:77326832-78172786	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1004938	chr2:77347740-78186543	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv535783	chr2:77347740-78186543	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv529904	chr2:77347741-78186542	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv997329	chr2:77354560-78176285	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	esv2757810	chr2:77855098-78101551	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv2759067	chr2:77855098-78101551	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv874345	chr2:77912770-78199268	Enhancers Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1013910	chr2:77950993-78115558	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv834270	chr2:77958854-78132128	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv917204	chr2:78047538-78602013	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv2794	chr2:78057118-78102218	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
13	nsv874354	chr2:78061074-78117502	Weak transcription Enhancers ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
14	esv3329151	chr2:78071300-78271485	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv1003166	chr2:78091352-78211828	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv1001461	chr2:78091352-78673948	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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