Variant report
Variant | rs73941497 |
---|---|
Chromosome Location | chr2:78082561-78082562 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10171058 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs10171354 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs10172992 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs10177577 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs10180629 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs10180778 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs10183724 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs10187045 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs10189854 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs10190419 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs10194681 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs10194687 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs10194769 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs10197479 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs10198017 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs10200610 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs10204187 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs10204293 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs10205106 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs10210416 | 0.82[EUR][1000 genomes] |
rs11126637 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs11126638 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs11126639 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs13389716 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs13398826 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs13407633 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs13414834 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs13414909 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs13432504 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs1594701 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs1594702 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs1594703 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs17014636 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs17014637 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs17014676 | 0.82[EUR][1000 genomes] |
rs56839384 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs57246327 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs57523484 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs57661886 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs58973365 | 0.93[EUR][1000 genomes] |
rs60150936 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs60718033 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs61125183 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61144368 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72911942 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs72911945 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72911948 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72911955 | 0.93[EUR][1000 genomes] |
rs72911961 | 0.93[EUR][1000 genomes] |
rs72911963 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs72911969 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs72911977 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs72911981 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs72911986 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs72911989 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs72911991 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs72911992 | 0.93[EUR][1000 genomes] |
rs72913806 | 0.93[EUR][1000 genomes] |
rs72913812 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs72913813 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs72913815 | 0.93[EUR][1000 genomes] |
rs73941501 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv518504 | chr2:77326832-78172786 | Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
2 | nsv1004938 | chr2:77347740-78186543 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
3 | nsv535783 | chr2:77347740-78186543 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
4 | nsv529904 | chr2:77347741-78186542 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
5 | nsv997329 | chr2:77354560-78176285 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
6 | esv2757810 | chr2:77855098-78101551 | Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
7 | esv2759067 | chr2:77855098-78101551 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
8 | nsv874345 | chr2:77912770-78199268 | Enhancers Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
9 | nsv1013910 | chr2:77950993-78115558 | Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
10 | nsv834270 | chr2:77958854-78132128 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
11 | nsv518421 | chr2:77990389-78094407 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
12 | nsv874353 | chr2:78001566-78097679 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
13 | nsv917204 | chr2:78047538-78602013 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
14 | esv3346390 | chr2:78056346-78096156 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription | lncRNA | n/a | inside rSNPs | diseases |
15 | nsv2794 | chr2:78057118-78102218 | Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS | lncRNA | n/a | inside rSNPs | diseases |
16 | nsv874354 | chr2:78061074-78117502 | Weak transcription Enhancers ZNF genes & repeats | lncRNA | n/a | inside rSNPs | diseases |
17 | esv3329151 | chr2:78071300-78271485 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:78080600-78087000 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |