Variant report

Variant	rs10210711
Chromosome Location	chr2:99347034-99347035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZBTB7A	chr2:99346787-99347270	HepG2	liver:	n/a	n/a
2	POLR2A	chr2:99346578-99349177	HepG2	liver:	n/a	n/a
3	SIN3A	chr2:99346665-99347434	H1-hESC	embryonic stem cell:	n/a	chr2:99347045-99347056
4	MAX	chr2:99346545-99348819	HepG2	liver:	n/a	chr2:99347002-99347012
5	CREB1	chr2:99346553-99348804	HepG2	liver:	n/a	n/a
6	POLR2A	chr2:99346628-99347992	NB4	blood:	n/a	n/a
7	MYC	chr2:99346019-99347403	NB4	blood:	n/a	chr2:99347002-99347012
8	SPI1	chr2:99346605-99347116	HL-60	blood:	n/a	n/a
9	ZBTB7A	chr2:99346581-99347285	ECC-1	luminal epithelium:	n/a	n/a
10	MAX	chr2:99346622-99347083	ECC-1	luminal epithelium:	n/a	chr2:99347002-99347012
11	POLR2A	chr2:99346670-99348244	MCF-7	breast:	n/a	n/a
12	ZBTB7A	chr2:99346620-99347150	HepG2	liver:	n/a	n/a
13	POLR2A	chr2:99346782-99348278	HUVEC	blood vessel:	n/a	n/a
14	HDAC2	chr2:99346582-99347341	HepG2	liver:	n/a	n/a
15	MAZ	chr2:99346625-99348050	HepG2	liver:	n/a	chr2:99347002-99347012
16	MAX	chr2:99346502-99347151	MCF-7	breast:	n/a	chr2:99347002-99347012
17	MXI1	chr2:99346145-99347305	SK-N-SH	brain:	n/a	chr2:99347009-99347018
18	TAF1	chr2:99346556-99347136	H1-neurons	neurons:	n/a	n/a
19	MXI1	chr2:99346332-99348316	HepG2	liver:	n/a	chr2:99347009-99347018
20	TAF1	chr2:99346611-99348212	HepG2	liver:	n/a	n/a
21	CTCF	chr2:99346980-99347130	GM12864	blood:	n/a	n/a
22	HEY1	chr2:99346496-99349205	HepG2	liver:	n/a	chr2:99347342-99347357 chr2:99347044-99347059 chr2:99347015-99347030 chr2:99348124-99348139 chr2:99348047-99348062
23	ELF1	chr2:99346984-99347449	GM12878	blood:	n/a	chr2:99347175-99347187 chr2:99347018-99347030
24	EGR1	chr2:99346969-99347137	GM12878	blood:	n/a	chr2:99347003-99347013 chr2:99347077-99347090 chr2:99347002-99347012 chr2:99347074-99347088 chr2:99347018-99347028
25	POLR2A	chr2:99346483-99347408	GM12892	blood:	n/a	n/a
26	MAX	chr2:99346071-99347068	NB4	blood:	n/a	chr2:99347002-99347012
27	TAF1	chr2:99346899-99348149	HepG2	liver:	n/a	n/a
28	POLR2A	chr2:99346665-99347347	HepG2	liver:	n/a	n/a
29	POLR2A	chr2:99346522-99347117	H1-neurons	neurons:	n/a	n/a
30	ZNF263	chr2:99346485-99347247	HEK293-T-REx	kidney:	n/a	n/a
31	POLR2A	chr2:99346707-99348217	GM12892	blood:	n/a	n/a
32	POLR2A	chr2:99346509-99347619	H1-neurons	neurons:	n/a	n/a
33	SIN3AK20	chr2:99346589-99347163	HepG2	liver:	n/a	n/a
34	POLR2A	chr2:99346748-99348090	HepG2	liver:	n/a	n/a
35	CTCF	chr2:99346940-99347090	GM12868	blood:	n/a	n/a
36	MAZ	chr2:99346759-99347073	GM12878	blood:	n/a	chr2:99347002-99347012
37	REST	chr2:99346240-99347372	H1-neurons	neurons:	n/a	chr2:99347087-99347105 chr2:99347069-99347078 chr2:99347210-99347223 chr2:99347050-99347060 chr2:99347072-99347085 chr2:99347322-99347332 chr2:99346967-99346980
38	CEBPD	chr2:99346652-99347301	HepG2	liver:	n/a	n/a
39	CTCF	chr2:99346940-99347090	GM06990	blood:	n/a	n/a
40	ZBTB7A	chr2:99346652-99347284	ECC-1	luminal epithelium:	n/a	n/a
41	POLR2A	chr2:99346543-99347348	HL-60	blood:	n/a	n/a
42	YY1	chr2:99346840-99347372	HepG2	liver:	n/a	chr2:99347349-99347358 chr2:99347045-99347056 chr2:99347016-99347027 chr2:99347016-99347025 chr2:99346901-99346915 chr2:99347085-99347096

No.	Distal block	Cell Line	Cell type
1	chr2:99221557..99223102-chr2:99346482..99348239,2	MCF-7	breast:
2	chr2:99343338..99345259-chr2:99346373..99348700,3	MCF-7	breast:
3	chr2:99345360..99347894-chr2:99396622..99399352,2	MCF-7	breast:
4	chr2:99342514..99344879-chr2:99346177..99348798,2	K562	blood:
5	chr2:99344922..99348721-chr2:99382903..99389092,6	MCF-7	breast:
6	chr2:99342228..99344879-chr2:99346177..99348874,2	K562	blood:
7	chr2:99345368..99349321-chr2:99385005..99390572,6	MCF-7	breast:

Variant related genes	Relation type
MGAT4A	TF binding region
ENSG00000071073	Chromatin interaction
ENSG00000183513	Chromatin interaction
ENSG00000201070	Chromatin interaction
ENSG00000226791	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1016124	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10173832	0.89[AMR][1000 genomes]
rs10174321	0.90[ASN][1000 genomes]
rs10177696	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10194177	0.99[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10496332	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11123747	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11123749	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11123751	0.80[AMR][1000 genomes]
rs11885883	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12471383	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12477450	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12615301	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12993424	0.81[ASN][1000 genomes]
rs13391483	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13392306	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1514916	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1517681	0.81[ASN][1000 genomes]
rs1913621	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2013983	0.81[ASN][1000 genomes]
rs28783173	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs34521960	0.81[ASN][1000 genomes]
rs35477458	0.81[ASN][1000 genomes]
rs41445250	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4851150	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4851153	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4851154	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs58666702	0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6740656	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7420869	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7558236	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7599792	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011278	chr2:99280928-99638376	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535835	chr2:99280928-99638376	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv535836	chr2:99329084-99353519	Active TSS Bivalent/Poised TSS Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv535837	chr2:99329084-99358356	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv535838	chr2:99335416-99358356	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3377346	chr2:99345945-99348493	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv3405477	chr2:99346570-99349018	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99344200-99348400	Active TSS	Primary T cells fromperipheralblood	blood
2	chr2:99344600-99348600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr2:99344800-99348600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
4	chr2:99345000-99348800	Active TSS	Duodenum Mucosa	Duodenum
5	chr2:99345200-99348400	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr2:99345400-99348400	Active TSS	Primary T cells from cord blood	blood
7	chr2:99345600-99348400	Active TSS	Primary T helper cells PMA-I stimulated	--
8	chr2:99345600-99348400	Active TSS	Fetal Intestine Large	intestine
9	chr2:99345600-99349200	Active TSS	Colonic Mucosa	Colon
10	chr2:99345800-99348200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
11	chr2:99345800-99348200	Active TSS	Brain Anterior Caudate	brain
12	chr2:99345800-99348200	Active TSS	Stomach Smooth Muscle	stomach
13	chr2:99345800-99348400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
14	chr2:99345800-99348400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr2:99345800-99348400	Active TSS	Ovary	ovary
16	chr2:99345800-99348400	Active TSS	Psoas Muscle	Psoas
17	chr2:99345800-99348400	Active TSS	Rectal Mucosa Donor 29	rectum
18	chr2:99345800-99348400	Active TSS	Sigmoid Colon	Sigmoid Colon
19	chr2:99345800-99348400	Active TSS	Small Intestine	intestine
20	chr2:99345800-99348600	Active TSS	Right Atrium	heart
21	chr2:99345800-99348800	Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr2:99345800-99348800	Active TSS	Fetal Intestine Small	intestine
23	chr2:99345800-99348800	Active TSS	Right Ventricle	heart
24	chr2:99345800-99349400	Active TSS	Pancreas	Pancrea
25	chr2:99346000-99348200	Active TSS	Skeletal Muscle Female	skeletal muscle
26	chr2:99346000-99348400	Active TSS	Brain Hippocampus Middle	brain
27	chr2:99346000-99348400	Active TSS	Brain Substantia Nigra	brain
28	chr2:99346000-99348600	Active TSS	Brain Inferior Temporal Lobe	brain
29	chr2:99346000-99348600	Bivalent/Poised TSS	HepG2	liver
30	chr2:99346200-99348200	Active TSS	Rectal Mucosa Donor 31	rectum
31	chr2:99346200-99348400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
32	chr2:99346200-99348600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
33	chr2:99346200-99348600	Active TSS	Aorta	Aorta
34	chr2:99346200-99348800	Active TSS	Left Ventricle	heart
35	chr2:99346200-99348800	Active TSS	Lung	lung
36	chr2:99346200-99348800	Active TSS	Thymus	Thymus
37	chr2:99346400-99348200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
38	chr2:99346400-99348200	Active TSS	Breast Myoepithelial Primary Cells	Breast
39	chr2:99346400-99348200	Active TSS	Brain Cingulate Gyrus	brain
40	chr2:99346400-99348200	Active TSS	Stomach Mucosa	stomach
41	chr2:99346400-99348400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr2:99346400-99348400	Active TSS	Brain Angular Gyrus	brain
43	chr2:99346400-99348600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
44	chr2:99346400-99348600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
45	chr2:99346600-99347200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
46	chr2:99346600-99347200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr2:99346600-99347200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr2:99346600-99347200	Active TSS	Fetal Kidney	kidney
49	chr2:99346600-99347200	Bivalent/Poised TSS	HSMMtube	muscle
50	chr2:99346600-99348000	Active TSS	Primary T regulatory cells fromperipheralblood	blood

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