Variant report

Variant	rs11123751
Chromosome Location	chr2:99369757-99369758
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:99361547..99363646-chr2:99366990..99369948,2	MCF-7	breast:
2	chr2:99346543..99348258-chr2:99368411..99371115,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000071073	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1016124	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10177696	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10194177	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10210711	0.80[AMR][1000 genomes]
rs10496332	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11123747	1.00[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11123749	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11885883	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12471383	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12477450	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.85[TSI][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12615301	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13391483	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1514916	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1913621	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28783173	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41445250	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];0.90[MEX][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4851150	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4851153	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4851154	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58666702	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7420869	0.81[EUR][1000 genomes]
rs7558236	1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7599792	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011278	chr2:99280928-99638376	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535835	chr2:99280928-99638376	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv520854	chr2:99369757-99373720	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99359600-99374000	Weak transcription	Aorta	Aorta
2	chr2:99361400-99374000	Weak transcription	Pancreas	Pancrea
3	chr2:99362400-99372800	Weak transcription	Primary T cells from cord blood	blood
4	chr2:99364800-99371200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr2:99365200-99372200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr2:99365400-99371600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr2:99365400-99372400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr2:99365600-99373600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr2:99365800-99374400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr2:99366000-99369800	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr2:99366200-99372200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr2:99366600-99373200	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr2:99367000-99370200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr2:99367200-99370000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr2:99367400-99374000	Weak transcription	Esophagus	oesophagus
16	chr2:99368800-99370000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr2:99369600-99373600	Weak transcription	HUVEC	blood vessel

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