Variant report

Variant	rs10212572
Chromosome Location	chr3:24043710-24043711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs35508585	1.00[AMR][1000 genomes]
rs62253385	1.00[EUR][1000 genomes]
rs62253390	1.00[EUR][1000 genomes]
rs62253393	1.00[EUR][1000 genomes]
rs62253394	1.00[EUR][1000 genomes]
rs62253395	1.00[EUR][1000 genomes]
rs62253396	1.00[EUR][1000 genomes]
rs6550832	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6766081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6778441	1.00[AMR][1000 genomes]
rs6778679	1.00[AMR][1000 genomes]
rs6783832	1.00[AMR][1000 genomes]
rs6791430	1.00[AMR][1000 genomes]
rs73822618	1.00[AMR][1000 genomes]
rs7641207	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9809073	1.00[AMR][1000 genomes]
rs9812887	1.00[EUR][1000 genomes]
rs9834767	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv536523	chr3:24041166-24076110	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24036000-24053400	Weak transcription	Psoas Muscle	Psoas
2	chr3:24041000-24045600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:24041000-24045600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:24043600-24043800	Enhancers	Rectal Smooth Muscle	rectum
5	chr3:24043600-24044200	Enhancers	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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