Variant report

Variant	rs9809073
Chromosome Location	chr3:24035953-24035954
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24033094..24034761-chr3:24035791..24038107,2	K562	blood:
2	chr3:24033672..24036269-chr3:24038559..24040609,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10212572	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs35508585	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6766081	1.00[AMR][1000 genomes]
rs6778441	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6778679	1.00[AMR][1000 genomes]
rs6783832	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6791430	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73822618	1.00[AMR][1000 genomes]
rs9834767	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9839486	1.00[ASW][hapmap];1.00[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24019600-24040800	Weak transcription	NHLF	lung
2	chr3:24030800-24040400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:24032200-24036000	Enhancers	Brain Substantia Nigra	brain
4	chr3:24032200-24036200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:24032200-24036600	Enhancers	Fetal Stomach	stomach
6	chr3:24032600-24036000	Enhancers	Fetal Lung	lung
7	chr3:24032600-24036200	Enhancers	Rectal Smooth Muscle	rectum
8	chr3:24032800-24036400	Enhancers	Colon Smooth Muscle	Colon
9	chr3:24032800-24036800	Enhancers	Fetal Heart	heart
10	chr3:24033200-24036000	Enhancers	Psoas Muscle	Psoas
11	chr3:24033200-24036200	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr3:24033400-24036400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr3:24033600-24036000	Enhancers	Brain Germinal Matrix	brain
14	chr3:24033600-24039000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:24033600-24040600	Weak transcription	Primary B cells from cord blood	blood
16	chr3:24033800-24036000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr3:24033800-24036200	Enhancers	Brain Cingulate Gyrus	brain
18	chr3:24033800-24036600	Enhancers	Primary hematopoietic stem cells	blood
19	chr3:24033800-24040600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:24034000-24036200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr3:24034200-24036000	Enhancers	Brain Hippocampus Middle	brain
22	chr3:24034200-24036000	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr3:24034200-24036200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr3:24034200-24036800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr3:24034200-24039000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:24034400-24036000	Enhancers	Fetal Brain Male	brain
27	chr3:24034600-24036400	Enhancers	Aorta	Aorta
28	chr3:24034600-24037200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr3:24034600-24040400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:24034800-24036200	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr3:24035000-24036000	Enhancers	Lung	lung
32	chr3:24035000-24036000	Enhancers	Ovary	ovary
33	chr3:24035000-24036200	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr3:24035000-24036200	Enhancers	Stomach Smooth Muscle	stomach
35	chr3:24035000-24036400	Enhancers	Fetal Muscle Leg	muscle
36	chr3:24035000-24036400	Enhancers	Right Atrium	heart
37	chr3:24035200-24036000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr3:24035200-24036000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr3:24035200-24036000	Enhancers	Left Ventricle	heart
40	chr3:24035200-24036000	Enhancers	HSMMtube	muscle
41	chr3:24035200-24040600	Weak transcription	Brain Anterior Caudate	brain
42	chr3:24035400-24036000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr3:24035400-24036000	Enhancers	NHDF-Ad	bronchial
44	chr3:24035400-24036200	Enhancers	Adipose Nuclei	Adipose
45	chr3:24035400-24036200	Enhancers	Fetal Kidney	kidney
46	chr3:24035400-24037400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr3:24035600-24036000	Weak transcription	Fetal Muscle Trunk	muscle
48	chr3:24035600-24036600	Enhancers	Right Ventricle	heart
49	chr3:24035800-24037400	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr3:24035800-24040400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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