Variant report

Variant	rs10213430
Chromosome Location	chr4:20702856-20702857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:20702290..20703806-chr4:20728599..20731005,2	K562	blood:
2	chr4:20702272..20703966-chr4:20709575..20711144,2	MCF-7	breast:
3	chr4:20700439..20703043-chr4:20709421..20711457,2	MCF-7	breast:
4	chr4:20702290..20704847-chr4:20728043..20731005,3	K562	blood:
5	chr4:20693086..20698959-chr4:20699230..20704175,9	K562	blood:

Variant related genes	Relation type
ENSG00000163138	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10026509	0.95[AFR][1000 genomes]
rs10032537	0.95[AFR][1000 genomes]
rs10516360	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12331962	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16869915	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73110233	0.84[AFR][1000 genomes]
rs7679050	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7688805	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7696218	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9291412	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013077	chr4:20599841-20732558	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1010145	chr4:20601908-21057992	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv537052	chr4:20601908-21057992	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv829876	chr4:20638736-20835621	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20701000-20703200	Active TSS	Skeletal Muscle Female	skeletal muscle
2	chr4:20701000-20703400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:20701200-20703000	Active TSS	H9 Cell Line	embryonic stem cell
4	chr4:20701200-20703000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:20701200-20703000	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr4:20701200-20703000	Flanking Active TSS	Primary B cells from cord blood	blood
7	chr4:20701200-20703000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:20701200-20703000	Active TSS	Fetal Kidney	kidney
9	chr4:20701200-20703200	Active TSS	HUES64 Cell Line	embryonic stem cell
10	chr4:20701200-20703200	Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chr4:20701200-20703200	Active TSS	Right Ventricle	heart
12	chr4:20701200-20703400	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr4:20701400-20703000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:20701400-20703000	Active TSS	Left Ventricle	heart
15	chr4:20701400-20703000	Active TSS	HSMMtube	muscle
16	chr4:20701400-20703200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr4:20701400-20703200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:20701400-20703200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr4:20701400-20703200	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr4:20701400-20703200	Active TSS	Psoas Muscle	Psoas
21	chr4:20701400-20703200	Active TSS	HSMM	muscle
22	chr4:20701400-20703200	Active TSS	K562	blood
23	chr4:20701400-20703200	Active TSS	NHLF	lung
24	chr4:20701400-20703400	Active TSS	A549	lung
25	chr4:20701600-20703000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr4:20701600-20703000	Active TSS	HUES48 Cell Line	embryonic stem cell
27	chr4:20701600-20703000	Active TSS	Esophagus	oesophagus
28	chr4:20701600-20703200	Active TSS	GM12878-XiMat	blood
29	chr4:20701800-20703000	Active TSS	Colonic Mucosa	Colon
30	chr4:20701800-20703400	Active TSS	iPS-18 Cell Line	embryonic stem cell
31	chr4:20702400-20703000	Flanking Active TSS	Primary T cells from cord blood	blood
32	chr4:20702400-20703000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
33	chr4:20702400-20703000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
34	chr4:20702400-20703000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
35	chr4:20702400-20703000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
36	chr4:20702400-20703000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
37	chr4:20702400-20703000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr4:20702400-20703000	Flanking Active TSS	Adipose Nuclei	Adipose
39	chr4:20702400-20703000	Flanking Active TSS	Liver	Liver
40	chr4:20702400-20703000	Flanking Active TSS	Brain Cingulate Gyrus	brain
41	chr4:20702400-20703000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
42	chr4:20702400-20703000	Flanking Active TSS	Fetal Heart	heart
43	chr4:20702400-20703000	Flanking Active TSS	Fetal Stomach	stomach
44	chr4:20702400-20703000	Flanking Active TSS	Fetal Thymus	thymus
45	chr4:20702400-20703000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
46	chr4:20702400-20703000	Flanking Active TSS	HUVEC	blood vessel
47	chr4:20702400-20703000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
48	chr4:20702400-20703200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
49	chr4:20702400-20703200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr4:20702400-20703200	Flanking Active TSS	Stomach Smooth Muscle	stomach

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