Variant report

Variant	rs9291412
Chromosome Location	chr4:20727464-20727465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10017693	0.83[YRI][hapmap]
rs10213430	0.96[EUR][1000 genomes]
rs10516360	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12331962	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16869915	1.00[CEU][hapmap];0.83[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7666288	0.96[YRI][hapmap]
rs7679050	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs7688805	0.88[GIH][hapmap];0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013077	chr4:20599841-20732558	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1010145	chr4:20601908-21057992	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv537052	chr4:20601908-21057992	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv829876	chr4:20638736-20835621	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv869522	chr4:20724433-20938248	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20703000-20741400	Weak transcription	Stomach Mucosa	stomach
2	chr4:20703200-20741000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr4:20706800-20738600	Weak transcription	Psoas Muscle	Psoas
4	chr4:20707200-20739400	Weak transcription	HepG2	liver
5	chr4:20708200-20733600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr4:20715400-20738600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr4:20715400-20739400	Weak transcription	Osteobl	bone
8	chr4:20718000-20738600	Weak transcription	NHDF-Ad	bronchial
9	chr4:20718200-20738400	Weak transcription	Fetal Heart	heart
10	chr4:20721600-20727600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:20721800-20736000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:20721800-20736400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:20721800-20737200	Strong transcription	Liver	Liver
14	chr4:20722000-20727800	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr4:20722200-20727600	Strong transcription	Brain Hippocampus Middle	brain
16	chr4:20722800-20735800	Strong transcription	Skeletal Muscle Female	skeletal muscle
17	chr4:20723000-20738400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr4:20724200-20727800	Strong transcription	HUVEC	blood vessel
19	chr4:20724200-20730200	Strong transcription	Left Ventricle	heart
20	chr4:20724200-20736000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr4:20724200-20736000	Strong transcription	Adipose Nuclei	Adipose
22	chr4:20724200-20737000	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr4:20724200-20738800	Weak transcription	Gastric	stomach
24	chr4:20724200-20738800	Weak transcription	Small Intestine	intestine
25	chr4:20724400-20727600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr4:20724400-20727800	Strong transcription	Primary B cells from peripheral blood	blood
27	chr4:20724400-20727800	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr4:20724400-20729000	Weak transcription	HSMMtube	muscle
29	chr4:20724400-20729400	Weak transcription	Fetal Intestine Small	intestine
30	chr4:20724400-20729400	Weak transcription	Fetal Stomach	stomach
31	chr4:20724400-20730400	Weak transcription	NH-A	brain
32	chr4:20724400-20730800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr4:20724400-20732200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr4:20724400-20735200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr4:20724400-20735400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr4:20724400-20735400	Weak transcription	Lung	lung
37	chr4:20724400-20735400	Weak transcription	Pancreas	Pancrea
38	chr4:20724400-20735600	Strong transcription	Dnd41	blood
39	chr4:20724400-20735800	Strong transcription	Fetal Intestine Large	intestine
40	chr4:20724400-20736200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr4:20724400-20736200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr4:20724400-20737000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr4:20724400-20737000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr4:20724400-20738400	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr4:20724400-20738800	Weak transcription	Esophagus	oesophagus
46	chr4:20724400-20738800	Weak transcription	HMEC	breast
47	chr4:20724400-20739000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr4:20724400-20739400	Weak transcription	Fetal Thymus	thymus
49	chr4:20724400-20739400	Weak transcription	Thymus	Thymus
50	chr4:20724400-20739400	Weak transcription	Spleen	Spleen

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