Variant report

Variant	rs10214854
Chromosome Location	chr6:55115679-55115680
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16869572	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17682926	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2653346	1.00[CEU][hapmap]
rs9475212	1.00[CEU][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016461	chr6:55038131-55129663	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55114600-55115800	Enhancers	H1 Cell Line	embryonic stem cell
2	chr6:55114600-55115800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr6:55114600-55116400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:55114800-55115800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:55115000-55115800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr6:55115200-55115800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr6:55115400-55115800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:55115400-55115800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:55115600-55116000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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