Variant report

Variant	rs10214868
Chromosome Location	chr6:144151158-144151159
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144149624..144152602-chr6:144162704..144166301,3	MCF-7	breast:
2	chr6:144147310..144149467-chr6:144150399..144152146,2	K562	blood:
3	chr6:144149084..144151621-chr6:144157302..144159967,3	K562	blood:

Variant related genes	Relation type
ENSG00000135521	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2092714	1.00[AMR][1000 genomes]
rs41400945	1.00[AMR][1000 genomes]
rs9496776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496778	0.93[AFR][1000 genomes]
rs9496780	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1034894	chr6:144148566-144170036	Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144122200-144155000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:144122200-144163600	Weak transcription	Colonic Mucosa	Colon
3	chr6:144122200-144163600	Weak transcription	Fetal Kidney	kidney
4	chr6:144125600-144163600	Weak transcription	Psoas Muscle	Psoas
5	chr6:144125800-144163600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:144128800-144163600	Weak transcription	HSMMtube	muscle
7	chr6:144129200-144152800	Weak transcription	Primary B cells from cord blood	blood
8	chr6:144129200-144159200	Weak transcription	HepG2	liver
9	chr6:144129200-144163600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:144129200-144163600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:144129600-144163600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:144130200-144163400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:144130200-144163800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr6:144130400-144159800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr6:144134000-144156800	Weak transcription	Pancreas	Pancrea
16	chr6:144134000-144163800	Weak transcription	Aorta	Aorta
17	chr6:144134000-144163800	Weak transcription	Esophagus	oesophagus
18	chr6:144134000-144164000	Weak transcription	Gastric	stomach
19	chr6:144136600-144163600	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr6:144140800-144163400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:144141400-144151400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:144141600-144158800	Weak transcription	Fetal Intestine Large	intestine
23	chr6:144141800-144152000	Weak transcription	Spleen	Spleen
24	chr6:144141800-144152400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:144142200-144164000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:144142800-144152800	Weak transcription	K562	blood
27	chr6:144143000-144163400	Weak transcription	Fetal Stomach	stomach
28	chr6:144143800-144155200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:144144200-144153200	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr6:144144200-144158200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:144144200-144160000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr6:144144200-144164000	Weak transcription	Lung	lung
33	chr6:144145000-144152400	Weak transcription	Ovary	ovary
34	chr6:144145000-144153200	Strong transcription	Placenta	Placenta
35	chr6:144145200-144157400	Weak transcription	Left Ventricle	heart
36	chr6:144145200-144163600	Weak transcription	NH-A	brain
37	chr6:144145200-144163600	Weak transcription	NHEK	skin
38	chr6:144146200-144154200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:144146200-144159200	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr6:144146200-144163600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:144146400-144163600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr6:144146400-144163600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr6:144146600-144155000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr6:144147800-144153200	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr6:144147800-144163400	Weak transcription	HUVEC	blood vessel
46	chr6:144148000-144152800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr6:144148400-144154600	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr6:144149200-144151800	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr6:144150000-144158800	Weak transcription	Fetal Intestine Small	intestine
50	chr6:144150000-144163400	Weak transcription	Fetal Muscle Trunk	muscle

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