Variant report

Variant	rs41400945
Chromosome Location	chr6:144117054-144117055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10214868	1.00[AMR][1000 genomes]
rs17073108	1.00[MEX][hapmap]
rs2092714	1.00[AMR][1000 genomes]
rs9496776	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144067800-144122000	Weak transcription	Colonic Mucosa	Colon
2	chr6:144070200-144122000	Weak transcription	Small Intestine	intestine
3	chr6:144077800-144122000	Weak transcription	Fetal Brain Male	brain
4	chr6:144080600-144122000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr6:144083600-144128600	Weak transcription	Hela-S3	cervix
6	chr6:144087000-144122000	Weak transcription	Pancreas	Pancrea
7	chr6:144096400-144122000	Weak transcription	Stomach Mucosa	stomach
8	chr6:144096600-144122000	Weak transcription	Psoas Muscle	Psoas
9	chr6:144102000-144122000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:144102600-144122000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr6:144105600-144122000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:144107600-144117600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:144107800-144122000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr6:144108000-144130400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:144108400-144122000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:144108400-144122000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr6:144108400-144125400	Weak transcription	NH-A	brain
18	chr6:144109400-144117400	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr6:144109800-144136600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:144111000-144143800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:144111200-144122000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr6:144111400-144122000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr6:144111400-144126800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:144111400-144127400	Weak transcription	NHLF	lung
25	chr6:144111400-144140400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr6:144111600-144122000	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr6:144111600-144122000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:144111600-144126000	Weak transcription	HSMM	muscle
29	chr6:144111600-144149000	Weak transcription	Right Ventricle	heart
30	chr6:144111800-144122000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:144111800-144122000	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr6:144111800-144122000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr6:144111800-144122000	Weak transcription	Spleen	Spleen
34	chr6:144111800-144127200	Weak transcription	NHDF-Ad	bronchial
35	chr6:144111800-144128200	Weak transcription	NHEK	skin
36	chr6:144112400-144123800	Weak transcription	Osteobl	bone
37	chr6:144112800-144123200	Weak transcription	HUVEC	blood vessel
38	chr6:144113600-144117400	Strong transcription	Fetal Intestine Large	intestine
39	chr6:144113800-144122000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr6:144113800-144122000	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr6:144113800-144129000	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr6:144113800-144132200	Weak transcription	A549	lung
43	chr6:144114000-144117400	Strong transcription	Placenta	Placenta
44	chr6:144114000-144122000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr6:144114000-144122000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:144114000-144122000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr6:144114000-144122000	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr6:144114000-144122000	Weak transcription	Aorta	Aorta
49	chr6:144114000-144122000	Weak transcription	Esophagus	oesophagus
50	chr6:144114000-144122000	Weak transcription	Fetal Kidney	kidney

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