Variant report

Variant	rs10214882
Chromosome Location	chr6:143912198-143912199
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143911987..143913949-chr6:143918045..143919572,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10484802	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191296	0.82[EUR][1000 genomes]
rs12191485	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12199016	0.81[EUR][1000 genomes]
rs12204876	0.82[EUR][1000 genomes]
rs12205130	0.81[EUR][1000 genomes]
rs12205256	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12212759	0.80[EUR][1000 genomes]
rs12216096	0.83[EUR][1000 genomes]
rs58388072	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919613	0.81[EUR][1000 genomes]
rs73003366	0.81[EUR][1000 genomes]
rs7744771	0.81[EUR][1000 genomes]
rs7749314	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9321926	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9321928	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9321929	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9321930	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376769	0.86[EUR][1000 genomes]
rs9399450	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9403513	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9484777	0.81[EUR][1000 genomes]
rs9496688	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9496692	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9496694	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143895600-143918200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:143899400-143918000	Weak transcription	Spleen	Spleen
3	chr6:143899800-143919200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:143900800-143918200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr6:143901200-143918000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:143903200-143912600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr6:143903400-143918200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:143903600-143912200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr6:143903600-143918600	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr6:143905600-143915600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:143906600-143915400	Weak transcription	Gastric	stomach
12	chr6:143908000-143912600	Weak transcription	Fetal Intestine Small	intestine
13	chr6:143908000-143914600	Weak transcription	Fetal Stomach	stomach
14	chr6:143908000-143915800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr6:143910400-143918200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:143910600-143918000	Weak transcription	Right Atrium	heart
17	chr6:143911200-143929200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:143911400-143912800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:143911400-143912800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr6:143911400-143913800	Enhancers	Placenta	Placenta
21	chr6:143911600-143912200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:143911800-143913000	Strong transcription	Fetal Intestine Large	intestine
23	chr6:143911800-143915800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:143912000-143912400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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