Variant report

Variant	rs12204876
Chromosome Location	chr6:143914004-143914005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143913267..143914036-chr6:144334250..144334794,2	K562	blood:
2	chr6:143913189..143915337-chr6:143920138..143922822,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10214882	0.82[EUR][1000 genomes]
rs10457749	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484802	0.82[EUR][1000 genomes]
rs12190134	0.83[EUR][1000 genomes]
rs12191296	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191485	0.82[EUR][1000 genomes]
rs12196002	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12199016	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203367	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205130	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205256	0.81[EUR][1000 genomes]
rs12206116	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12208244	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210250	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212759	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213878	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12216096	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1416209	0.90[ASN][1000 genomes]
rs17368239	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368267	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027280	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4142502	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55854171	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56381834	0.83[AMR][1000 genomes]
rs58388072	0.82[EUR][1000 genomes]
rs6919613	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72995603	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73003366	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73005383	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7744771	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749314	0.82[EUR][1000 genomes]
rs7751857	0.90[ASN][1000 genomes]
rs9321924	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321928	0.83[EUR][1000 genomes]
rs9321929	0.82[EUR][1000 genomes]
rs9321930	0.82[EUR][1000 genomes]
rs9399450	0.82[EUR][1000 genomes]
rs9403513	0.81[EUR][1000 genomes]
rs9484777	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9496663	0.83[EUR][1000 genomes]
rs9496677	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496688	0.82[EUR][1000 genomes]
rs9496692	0.82[EUR][1000 genomes]
rs9496694	0.82[EUR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143895600-143918200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:143899400-143918000	Weak transcription	Spleen	Spleen
3	chr6:143899800-143919200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:143900800-143918200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr6:143901200-143918000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:143903400-143918200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:143903600-143918600	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:143905600-143915600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:143906600-143915400	Weak transcription	Gastric	stomach
10	chr6:143908000-143914600	Weak transcription	Fetal Stomach	stomach
11	chr6:143908000-143915800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr6:143910400-143918200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:143910600-143918000	Weak transcription	Right Atrium	heart
14	chr6:143911200-143929200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr6:143911800-143915800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:143912200-143916800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:143912400-143915600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr6:143912600-143914400	Strong transcription	Fetal Intestine Small	intestine
19	chr6:143912600-143915600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr6:143912800-143918200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr6:143913000-143916400	Weak transcription	Fetal Intestine Large	intestine
22	chr6:143913000-143918800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr6:143913200-143919000	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr6:143913200-143928400	Weak transcription	Aorta	Aorta
25	chr6:143913800-143916400	Weak transcription	Placenta	Placenta

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