Variant report

Variant	rs12208244
Chromosome Location	chr6:143892639-143892640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143883318..143885795-chr6:143891662..143893627,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10457749	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190134	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12191296	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196002	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12199016	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203367	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204876	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205130	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206116	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12208160	1.00[CHB][hapmap]
rs12210250	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212759	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213878	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12216096	0.92[CEU][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13362700	0.86[AFR][1000 genomes]
rs1416209	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17072918	1.00[CHD][hapmap]
rs17368239	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368267	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027280	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4142502	0.92[CEU][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55854171	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6919613	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6937056	1.00[CHB][hapmap]
rs72995603	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73003366	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73005383	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7744771	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751857	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9321924	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484777	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9496663	0.92[CEU][hapmap];0.92[TSI][hapmap];0.89[EUR][1000 genomes]
rs9496677	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143866800-143904600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:143878000-143900800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:143878800-143902800	Weak transcription	Colonic Mucosa	Colon
4	chr6:143879200-143902800	Weak transcription	Fetal Intestine Large	intestine
5	chr6:143886400-143900400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:143887600-143895000	Weak transcription	Fetal Intestine Small	intestine
7	chr6:143888400-143898600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:143888600-143899200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr6:143890800-143896200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:143891000-143895200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:143891000-143896400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr6:143891200-143903200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:143891400-143899200	Weak transcription	Spleen	Spleen
14	chr6:143891800-143902000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:143892000-143896800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:143892200-143894200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:143892200-143896800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr6:143892400-143897000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr6:143892400-143897200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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