Variant report

Variant	rs12208160
Chromosome Location	chr6:143838372-143838373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143835407..143839181-chr6:143839359..143841894,3	K562	blood:
2	chr6:143836199..143838556-chr6:143869163..143871034,2	MCF-7	breast:
3	chr6:143829496..143838775-chr6:143854591..143861568,17	MCF-7	breast:
4	chr6:143836970..143840867-chr6:143848057..143852037,4	MCF-7	breast:
5	chr6:143838029..143840528-chr6:143845584..143847546,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112419	Chromatin interaction

rs_ID	r²[population]
rs10457749	1.00[CHB][hapmap]
rs12213878	1.00[CHB][hapmap]
rs13197430	1.00[JPT][hapmap]
rs1559598	1.00[CHB][hapmap]
rs17368239	1.00[CHB][hapmap]
rs17368267	1.00[CHB][hapmap]
rs1863137	1.00[CHB][hapmap]
rs2328474	1.00[CHB][hapmap]
rs6901152	1.00[CHB][hapmap]
rs6931802	1.00[CHB][hapmap]
rs9376743	1.00[CHB][hapmap]
rs9376745	1.00[CHB][hapmap]
rs9496677	1.00[CHB][hapmap]

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143833200-143849600	Weak transcription	Primary T cells from cord blood	blood
2	chr6:143833400-143838400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:143833400-143838400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:143833400-143849400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr6:143834600-143855800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:143835000-143850000	Weak transcription	Fetal Intestine Large	intestine
7	chr6:143835800-143838800	Enhancers	Stomach Mucosa	stomach
8	chr6:143836000-143838400	Enhancers	Fetal Muscle Leg	muscle
9	chr6:143836000-143838800	Enhancers	Left Ventricle	heart
10	chr6:143836400-143838800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
11	chr6:143836600-143838800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:143836800-143848400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:143837000-143838600	Enhancers	Right Ventricle	heart
14	chr6:143837200-143838800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
15	chr6:143837200-143838800	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr6:143837400-143838400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
17	chr6:143837400-143838400	Weak transcription	Pancreas	Pancrea
18	chr6:143837400-143838800	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr6:143837600-143838600	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr6:143837600-143838600	Enhancers	K562	blood
21	chr6:143837600-143838800	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr6:143837800-143838600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:143837800-143838600	Enhancers	Primary B cells from peripheral blood	blood
24	chr6:143837800-143838800	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr6:143837800-143841000	Enhancers	Fetal Heart	heart
26	chr6:143838200-143838400	Enhancers	Fetal Intestine Small	intestine
27	chr6:143838200-143838400	Flanking Active TSS	GM12878-XiMat	blood
28	chr6:143838200-143838600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:143838200-143838600	Enhancers	Small Intestine	intestine
30	chr6:143838200-143838800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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