Variant report

Variant	rs1863137
Chromosome Location	chr6:143653722-143653723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143642972..143644703-chr6:143653597..143655440,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10872558	0.91[EUR][1000 genomes]
rs12208160	1.00[CHB][hapmap]
rs1345991	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1364650	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1559598	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1885649	0.83[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2194655	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2216917	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs223586	1.00[ASN][1000 genomes]
rs223604	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs223606	1.00[ASN][1000 genomes]
rs223611	1.00[ASN][1000 genomes]
rs2328474	0.88[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4895609	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896643	0.91[EUR][1000 genomes]
rs4896644	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896645	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896646	0.90[EUR][1000 genomes]
rs6570555	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901152	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907215	0.88[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6917403	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6930404	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6931802	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7454731	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738887	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749040	0.87[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7760341	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7766829	0.88[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9373387	0.83[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9373390	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9376739	0.88[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9376743	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403480	0.88[CEU][hapmap];1.00[CHB][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9403487	0.81[EUR][1000 genomes]
rs9496542	1.00[CHB][hapmap]
rs972152	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143642600-143675600	Weak transcription	Left Ventricle	heart
2	chr6:143643800-143661200	Weak transcription	Aorta	Aorta
3	chr6:143645000-143683200	Weak transcription	Pancreas	Pancrea
4	chr6:143645200-143656800	Weak transcription	Psoas Muscle	Psoas
5	chr6:143645800-143655600	Weak transcription	Fetal Brain Female	brain
6	chr6:143646000-143664000	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr6:143647200-143654200	Weak transcription	HepG2	liver
8	chr6:143647200-143657400	Weak transcription	NHLF	lung
9	chr6:143647400-143654000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:143647400-143658200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:143647600-143654000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:143648600-143654200	Weak transcription	Liver	Liver
13	chr6:143650400-143654800	Weak transcription	Fetal Intestine Large	intestine
14	chr6:143650800-143657200	Weak transcription	NH-A	brain
15	chr6:143650800-143657400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:143650800-143657400	Weak transcription	NHDF-Ad	bronchial
17	chr6:143652400-143662200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr6:143652800-143656400	Weak transcription	Right Ventricle	heart
19	chr6:143652800-143664000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr6:143653000-143658200	Weak transcription	Fetal Intestine Small	intestine
21	chr6:143653000-143659000	Weak transcription	K562	blood
22	chr6:143653000-143662200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr6:143653000-143665600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr6:143653200-143654200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:143653200-143654600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:143653400-143654000	Enhancers	NHEK	skin
27	chr6:143653400-143654000	Enhancers	Osteobl	bone
28	chr6:143653400-143654400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:143653400-143654600	Enhancers	HSMM	muscle
30	chr6:143653400-143654800	Enhancers	HMEC	breast
31	chr6:143653400-143663800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr6:143653600-143653800	Enhancers	Adipose Nuclei	Adipose
33	chr6:143653600-143653800	Enhancers	Fetal Kidney	kidney
34	chr6:143653600-143653800	Enhancers	Fetal Lung	lung
35	chr6:143653600-143653800	Enhancers	Fetal Muscle Leg	muscle
36	chr6:143653600-143653800	Enhancers	Fetal Stomach	stomach
37	chr6:143653600-143653800	Active TSS	Lung	lung
38	chr6:143653600-143654000	Enhancers	Ovary	ovary
39	chr6:143653600-143655200	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr6:143653600-143656000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:143653600-143658000	Weak transcription	H9 Cell Line	embryonic stem cell

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