Variant report

Variant	rs9373387
Chromosome Location	chr6:143634664-143634665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1345991	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1364650	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1559598	0.83[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes]
rs1570350	0.86[ASW][hapmap]
rs1863137	0.83[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1885649	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2194655	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2216917	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2328474	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895609	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4896644	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4896645	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6570555	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6901152	0.83[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];0.83[TSI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6907215	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917403	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6930404	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6931802	1.00[CHB][hapmap]
rs6933721	1.00[ASW][hapmap]
rs7454731	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7738887	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7749040	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760341	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7766829	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373390	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9376739	0.96[CEU][hapmap];1.00[CHB][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376743	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9376745	0.83[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes]
rs9403480	0.86[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.95[TSI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496542	1.00[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs972152	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143615400-143643400	Weak transcription	HSMM	muscle
2	chr6:143623200-143644600	Weak transcription	Liver	Liver
3	chr6:143630000-143637200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:143634600-143634800	ZNF genes & repeats	Psoas Muscle	Psoas

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