Variant report

Variant	rs6933721
Chromosome Location	chr6:143600801-143600802
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1570350	0.86[ASW][hapmap]
rs1885649	1.00[ASW][hapmap];0.86[MEX][hapmap];0.89[MKK][hapmap]
rs6901152	0.84[MKK][hapmap]
rs7763696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321898	0.96[CEU][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs9373387	1.00[ASW][hapmap]
rs9399433	0.96[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9403479	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403480	0.86[ASW][hapmap];0.86[MEX][hapmap];0.89[MKK][hapmap]
rs9496542	1.00[ASW][hapmap];0.89[MKK][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6933721	SHPRH	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143570800-143609200	Weak transcription	Fetal Intestine Large	intestine
2	chr6:143583400-143606000	Weak transcription	Fetal Intestine Small	intestine
3	chr6:143583800-143615400	Weak transcription	K562	blood
4	chr6:143589000-143607400	Weak transcription	Aorta	Aorta
5	chr6:143591400-143605200	Weak transcription	Liver	Liver
6	chr6:143592200-143605600	Weak transcription	Adipose Nuclei	Adipose
7	chr6:143593200-143606800	Weak transcription	NHEK	skin
8	chr6:143593400-143607000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:143595400-143605400	Weak transcription	HepG2	liver
10	chr6:143595600-143602800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:143598600-143620200	Weak transcription	Brain Angular Gyrus	brain
12	chr6:143600600-143602200	Weak transcription	Fetal Heart	heart
13	chr6:143600600-143609200	Weak transcription	Brain Anterior Caudate	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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