Variant report

Variant	rs6570555
Chromosome Location	chr6:143676186-143676187
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10872558	0.93[EUR][1000 genomes]
rs12208160	1.00[CHB][hapmap]
rs1345991	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1364650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1559598	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1863137	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1885649	0.83[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2194655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2216917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs223586	1.00[ASN][1000 genomes]
rs223604	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs223606	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs223611	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2328474	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4895609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896643	0.93[EUR][1000 genomes]
rs4896644	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896645	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896646	0.92[EUR][1000 genomes]
rs6901152	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907215	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs6917403	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6930404	0.83[AMR][1000 genomes]
rs6931802	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7454731	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749040	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs7760341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7766829	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9373387	0.83[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9373390	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9376739	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs9376743	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376745	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403480	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs9403487	0.83[EUR][1000 genomes]
rs9496542	1.00[CHB][hapmap]
rs972152	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143645000-143683200	Weak transcription	Pancreas	Pancrea
2	chr6:143673000-143708000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:143675600-143676400	ZNF genes & repeats	Left Ventricle	heart
4	chr6:143675600-143676600	Strong transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links