Variant report

Variant	rs10872558
Chromosome Location	chr6:143671830-143671831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1121170	0.93[ASN][1000 genomes]
rs11962852	0.89[CHD][hapmap]
rs1345991	0.93[EUR][1000 genomes]
rs1364650	0.93[EUR][1000 genomes]
rs1559598	0.96[CEU][hapmap];0.80[TSI][hapmap];0.91[EUR][1000 genomes]
rs17072445	1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.86[YRI][hapmap];0.93[ASN][1000 genomes]
rs17072465	0.90[ASN][1000 genomes]
rs17072476	0.90[ASN][1000 genomes]
rs1863137	0.96[CEU][hapmap];0.80[TSI][hapmap];0.91[EUR][1000 genomes]
rs2194655	0.93[EUR][1000 genomes]
rs2216917	0.93[EUR][1000 genomes]
rs223604	0.90[EUR][1000 genomes]
rs2328474	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs4895609	0.93[EUR][1000 genomes]
rs4896643	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896644	0.95[EUR][1000 genomes]
rs4896645	0.95[EUR][1000 genomes]
rs4896646	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56391042	0.90[ASN][1000 genomes]
rs6570555	0.93[EUR][1000 genomes]
rs6901152	0.96[CEU][hapmap];0.84[TSI][hapmap];0.93[EUR][1000 genomes]
rs6907215	0.84[CEU][hapmap]
rs6917403	0.91[EUR][1000 genomes]
rs6917977	0.90[ASN][1000 genomes]
rs6927966	0.93[ASN][1000 genomes]
rs6937436	0.90[ASN][1000 genomes]
rs7454731	0.95[EUR][1000 genomes]
rs7738887	0.93[EUR][1000 genomes]
rs7738987	1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7749040	0.83[CEU][hapmap]
rs7760341	0.93[EUR][1000 genomes]
rs7766829	0.84[CEU][hapmap]
rs9321903	0.81[ASN][1000 genomes]
rs9373390	0.94[EUR][1000 genomes]
rs9376739	0.84[CEU][hapmap]
rs9376743	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs9376745	0.96[CEU][hapmap];0.80[TSI][hapmap];0.91[EUR][1000 genomes]
rs9403480	0.84[CEU][hapmap]
rs9403487	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9484731	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9496552	1.00[CHB][hapmap]
rs9496607	0.81[ASN][1000 genomes]
rs972152	0.93[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10872558	PLAGL1	cis	lymphoblastoid	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143642600-143675600	Weak transcription	Left Ventricle	heart
2	chr6:143645000-143683200	Weak transcription	Pancreas	Pancrea
3	chr6:143654000-143672000	Weak transcription	Ovary	ovary
4	chr6:143662800-143675600	Weak transcription	Liver	Liver
5	chr6:143670800-143673000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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