Variant report

Variant	rs56391042
Chromosome Location	chr6:143690697-143690698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10872558	0.90[ASN][1000 genomes]
rs1121170	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17072445	0.97[ASN][1000 genomes]
rs17072465	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17072476	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2328476	1.00[EUR][1000 genomes]
rs4896643	0.90[ASN][1000 genomes]
rs4896646	0.80[ASN][1000 genomes]
rs56904665	1.00[EUR][1000 genomes]
rs6909810	1.00[EUR][1000 genomes]
rs6917977	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927966	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6937122	1.00[EUR][1000 genomes]
rs6937436	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738987	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9321903	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9484731	0.97[ASN][1000 genomes]
rs9496603	0.90[EUR][1000 genomes]
rs9496607	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143673000-143708000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:143690000-143692200	Enhancers	GM12878-XiMat	blood
3	chr6:143690400-143692000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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