Variant report

Variant	rs4895609
Chromosome Location	chr6:143678135-143678136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10872558	0.93[EUR][1000 genomes]
rs12208160	1.00[CHB][hapmap]
rs1345991	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1364650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1559598	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1863137	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1885649	0.83[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];0.93[MEX][hapmap];0.94[MKK][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2194655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2216917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs223586	1.00[ASN][1000 genomes]
rs223604	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs223606	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs223611	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2328474	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4896643	0.93[EUR][1000 genomes]
rs4896644	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896645	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896646	0.92[EUR][1000 genomes]
rs6570555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901152	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907215	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs6917403	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6930404	0.83[AMR][1000 genomes]
rs6931802	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6933721	0.84[MKK][hapmap]
rs7454731	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749040	0.87[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs7760341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7766829	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9373387	0.83[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9373390	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9376739	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs9376743	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376745	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403480	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[MEX][hapmap];0.94[MKK][hapmap];0.83[AMR][1000 genomes]
rs9403487	0.83[EUR][1000 genomes]
rs9496542	1.00[CHB][hapmap];0.94[MKK][hapmap]
rs972152	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143645000-143683200	Weak transcription	Pancreas	Pancrea
2	chr6:143673000-143708000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:143676400-143682600	Weak transcription	Left Ventricle	heart
4	chr6:143677800-143678600	Enhancers	Fetal Stomach	stomach
5	chr6:143678000-143678200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:143678000-143678400	Enhancers	Liver	Liver
7	chr6:143678000-143678400	Enhancers	Ovary	ovary
8	chr6:143678000-143679400	Enhancers	Fetal Intestine Large	intestine
9	chr6:143678000-143679400	Enhancers	Fetal Lung	lung
10	chr6:143678000-143679600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:143678000-143679600	Enhancers	Adipose Nuclei	Adipose
12	chr6:143678000-143679600	Enhancers	Fetal Intestine Small	intestine

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