Variant report

Variant	rs223606
Chromosome Location	chr6:143705668-143705669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143703453..143706363-chr6:143716398..143717985,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12208160	1.00[CHB][hapmap]
rs1345991	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1364650	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1559598	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1863137	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1885649	1.00[CHB][hapmap]
rs2194655	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2216917	0.80[EUR][1000 genomes]
rs223586	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs223604	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs223611	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2328474	1.00[CHB][hapmap]
rs4895609	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896644	1.00[ASN][1000 genomes]
rs4896645	1.00[ASN][1000 genomes]
rs6570555	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901152	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6907215	1.00[CHB][hapmap]
rs6917403	1.00[ASN][1000 genomes]
rs6931802	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7454731	1.00[ASN][1000 genomes]
rs7738887	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749040	1.00[CHB][hapmap]
rs7760341	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7766829	1.00[CHB][hapmap]
rs9373387	1.00[CHB][hapmap]
rs9376739	1.00[CHB][hapmap]
rs9376743	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9376745	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9403480	1.00[CHB][hapmap]
rs9496542	1.00[CHB][hapmap]
rs9496677	1.00[CHB][hapmap]
rs972152	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143673000-143708000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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