Variant report

Variant	rs9496677
Chromosome Location	chr6:143896343-143896344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143896199..143896808-chr6:144260914..144261869,3	MCF-7	breast:
2	chr6:143894894..143897744-chr6:144327470..144329587,2	K562	blood:
3	chr6:143896199..143897161-chr6:144334481..144335481,6	K562	blood:
4	chr6:143896296..143897179-chr6:144283404..144284281,2	K562	blood:
5	chr6:143896253..143896901-chr6:144334460..144335006,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118495	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10046128	0.82[JPT][hapmap]
rs10457749	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190134	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12191296	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196002	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12199016	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203367	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204876	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205130	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206116	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12208160	1.00[CHB][hapmap]
rs12208244	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210250	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212759	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213878	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12216096	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1416209	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17368239	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368267	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027280	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4142502	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55854171	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6919613	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6937056	1.00[CHB][hapmap]
rs72995603	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73003366	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73005383	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7744771	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751857	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9321924	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484777	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9496663	0.92[CEU][hapmap];0.88[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143866800-143904600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:143878000-143900800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:143878800-143902800	Weak transcription	Colonic Mucosa	Colon
4	chr6:143879200-143902800	Weak transcription	Fetal Intestine Large	intestine
5	chr6:143886400-143900400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:143888400-143898600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:143888600-143899200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:143891000-143896400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:143891200-143903200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:143891400-143899200	Weak transcription	Spleen	Spleen
11	chr6:143891800-143902000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:143892000-143896800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:143892200-143896800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:143892400-143897000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr6:143892400-143897200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:143894400-143907600	Weak transcription	Stomach Mucosa	stomach
17	chr6:143895400-143899200	Weak transcription	Fetal Intestine Small	intestine
18	chr6:143895600-143918200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:143896200-143896400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:143896200-143896600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:143896200-143897200	Active TSS	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links