Variant report

Variant	rs6937056
Chromosome Location	chr6:144054208-144054209
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10457749	1.00[CHB][hapmap]
rs12203573	0.94[YRI][hapmap]
rs12209142	0.96[YRI][hapmap]
rs12213878	1.00[CHB][hapmap]
rs12214478	0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs17368239	1.00[CHB][hapmap]
rs17368267	1.00[CHB][hapmap]
rs6921024	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs6936437	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs73579888	0.91[AFR][1000 genomes]
rs73579897	0.95[AFR][1000 genomes]
rs73579901	0.97[AFR][1000 genomes]
rs73581804	0.93[AFR][1000 genomes]
rs742959	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs9496677	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144022200-144063200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:144022800-144057200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:144022800-144064200	Weak transcription	NH-A	brain
4	chr6:144023800-144063600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:144027800-144056000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:144028000-144054600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:144031000-144054600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:144031000-144062200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:144034600-144054800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:144035000-144063600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:144035200-144054400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:144038200-144063400	Weak transcription	HepG2	liver
13	chr6:144038600-144075400	Weak transcription	NHEK	skin
14	chr6:144039800-144055600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr6:144042000-144063400	Weak transcription	Lung	lung
16	chr6:144042200-144056000	Weak transcription	Liver	Liver
17	chr6:144043000-144054400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr6:144045000-144054600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:144045000-144054800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr6:144046000-144057400	Weak transcription	Left Ventricle	heart
21	chr6:144046000-144064200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr6:144046200-144057200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr6:144046200-144074600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr6:144046400-144058800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:144047000-144054600	Weak transcription	Fetal Stomach	stomach
26	chr6:144047000-144063800	Weak transcription	Fetal Intestine Small	intestine
27	chr6:144047200-144055600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:144047400-144055600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr6:144047400-144055600	Weak transcription	Fetal Lung	lung
30	chr6:144047400-144065000	Weak transcription	Fetal Muscle Trunk	muscle
31	chr6:144047600-144054400	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr6:144047800-144054400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:144047800-144055400	Weak transcription	Fetal Heart	heart
34	chr6:144047800-144055600	Weak transcription	Fetal Kidney	kidney
35	chr6:144047800-144064200	Weak transcription	Fetal Intestine Large	intestine
36	chr6:144048200-144055200	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr6:144048400-144054400	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr6:144048400-144063400	Weak transcription	NHDF-Ad	bronchial
39	chr6:144048400-144063600	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr6:144048400-144063800	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr6:144049200-144060600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr6:144049600-144054400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr6:144049800-144060600	Weak transcription	Fetal Muscle Leg	muscle
44	chr6:144052200-144061200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr6:144052400-144057000	Enhancers	Primary monocytes fromperipheralblood	blood
46	chr6:144052600-144056800	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr6:144052800-144056400	Enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr6:144053000-144055000	Enhancers	Primary hematopoietic stem cells	blood
49	chr6:144053200-144057600	Enhancers	Primary neutrophils fromperipheralblood	blood
50	chr6:144053400-144054600	Weak transcription	Small Intestine	intestine

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