Variant report

Variant	rs73579897
Chromosome Location	chr6:144053684-144053685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12214478	0.93[AFR][1000 genomes]
rs60077446	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6921024	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6936437	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6937056	0.95[AFR][1000 genomes]
rs73579888	0.96[AFR][1000 genomes]
rs73579901	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581804	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs742959	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144022200-144063200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:144022800-144057200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:144022800-144064200	Weak transcription	NH-A	brain
4	chr6:144023800-144063600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:144027800-144056000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:144028000-144054600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:144031000-144054600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:144031000-144062200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:144031400-144054000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:144034600-144054800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:144035000-144063600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:144035200-144054400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr6:144035600-144054200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr6:144038000-144054200	Weak transcription	Right Ventricle	heart
15	chr6:144038200-144063400	Weak transcription	HepG2	liver
16	chr6:144038600-144075400	Weak transcription	NHEK	skin
17	chr6:144039400-144053800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:144039800-144053800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:144039800-144055600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr6:144042000-144063400	Weak transcription	Lung	lung
21	chr6:144042200-144056000	Weak transcription	Liver	Liver
22	chr6:144043000-144054400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr6:144044800-144053800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:144045000-144054600	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr6:144045000-144054800	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr6:144046000-144057400	Weak transcription	Left Ventricle	heart
27	chr6:144046000-144064200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr6:144046200-144057200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr6:144046200-144074600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr6:144046400-144058800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:144047000-144054600	Weak transcription	Fetal Stomach	stomach
32	chr6:144047000-144063800	Weak transcription	Fetal Intestine Small	intestine
33	chr6:144047200-144055600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:144047400-144055600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr6:144047400-144055600	Weak transcription	Fetal Lung	lung
36	chr6:144047400-144065000	Weak transcription	Fetal Muscle Trunk	muscle
37	chr6:144047600-144054400	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr6:144047800-144054400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr6:144047800-144055400	Weak transcription	Fetal Heart	heart
40	chr6:144047800-144055600	Weak transcription	Fetal Kidney	kidney
41	chr6:144047800-144064200	Weak transcription	Fetal Intestine Large	intestine
42	chr6:144048200-144055200	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr6:144048400-144054000	Weak transcription	HUVEC	blood vessel
44	chr6:144048400-144054400	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr6:144048400-144063400	Weak transcription	NHDF-Ad	bronchial
46	chr6:144048400-144063600	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr6:144048400-144063800	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr6:144049200-144060600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr6:144049600-144054400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr6:144049800-144060600	Weak transcription	Fetal Muscle Leg	muscle

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