Variant report

Variant	rs6921024
Chromosome Location	chr6:144055515-144055516
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144054405..144056065-chr6:144133252..144136154,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12203573	0.93[YRI][hapmap]
rs12209142	0.93[ASW][hapmap];0.96[YRI][hapmap]
rs12214478	1.00[ASW][hapmap];0.95[LWK][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs60077446	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6936437	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6937056	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs73579888	0.94[AFR][1000 genomes]
rs73579897	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73579901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581804	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs742959	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144022200-144063200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:144022800-144057200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:144022800-144064200	Weak transcription	NH-A	brain
4	chr6:144023800-144063600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:144027800-144056000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:144031000-144062200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:144035000-144063600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:144038200-144063400	Weak transcription	HepG2	liver
9	chr6:144038600-144075400	Weak transcription	NHEK	skin
10	chr6:144039800-144055600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:144042000-144063400	Weak transcription	Lung	lung
12	chr6:144042200-144056000	Weak transcription	Liver	Liver
13	chr6:144046000-144057400	Weak transcription	Left Ventricle	heart
14	chr6:144046000-144064200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr6:144046200-144057200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr6:144046200-144074600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr6:144046400-144058800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:144047000-144063800	Weak transcription	Fetal Intestine Small	intestine
19	chr6:144047200-144055600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:144047400-144055600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:144047400-144055600	Weak transcription	Fetal Lung	lung
22	chr6:144047400-144065000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr6:144047800-144055600	Weak transcription	Fetal Kidney	kidney
24	chr6:144047800-144064200	Weak transcription	Fetal Intestine Large	intestine
25	chr6:144048400-144063400	Weak transcription	NHDF-Ad	bronchial
26	chr6:144048400-144063600	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr6:144048400-144063800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr6:144049200-144060600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:144049800-144060600	Weak transcription	Fetal Muscle Leg	muscle
30	chr6:144052200-144061200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr6:144052400-144057000	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr6:144052600-144056800	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr6:144052800-144056400	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr6:144053200-144057600	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr6:144053400-144076600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:144053600-144056000	Weak transcription	Duodenum Mucosa	Duodenum
37	chr6:144053600-144056000	Enhancers	K562	blood
38	chr6:144053600-144073600	Weak transcription	Osteobl	bone
39	chr6:144053600-144075400	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr6:144053600-144075600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr6:144053800-144055800	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr6:144053800-144056200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr6:144053800-144056400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:144053800-144079800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr6:144054000-144055800	Weak transcription	A549	lung
46	chr6:144054000-144056800	Enhancers	HUVEC	blood vessel
47	chr6:144054200-144056800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr6:144054200-144059200	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr6:144054400-144055800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr6:144054400-144055800	Weak transcription	Placenta	Placenta

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