Variant report

Variant	rs17368239
Chromosome Location	chr6:143934587-143934588
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143926590..143928506-chr6:143934076..143936971,2	MCF-7	breast:
2	chr6:143933160..143936004-chr6:143939923..143941547,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10457749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191296	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196002	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12199016	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203367	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204876	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205130	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206116	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12208160	1.00[CHB][hapmap]
rs12208244	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210250	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212759	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213878	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12216096	0.89[CEU][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1416209	0.90[ASN][1000 genomes]
rs17072918	1.00[CHD][hapmap]
rs17368267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027280	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4142502	0.80[TSI][hapmap]
rs55854171	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6919613	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6937056	1.00[CHB][hapmap]
rs72995603	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73003366	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73005383	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7744771	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751857	0.90[ASN][1000 genomes]
rs7772039	0.87[YRI][hapmap]
rs9321924	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376769	0.82[CEU][hapmap]
rs9484777	0.91[EUR][1000 genomes]
rs9496677	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1032369	chr6:143925374-144007513	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv604805	chr6:143930404-144005949	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143917000-143973600	Weak transcription	Fetal Intestine Small	intestine
2	chr6:143917200-143941400	Weak transcription	Fetal Intestine Large	intestine
3	chr6:143920000-143935200	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr6:143920200-143935000	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr6:143920600-143934800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:143929200-143935400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr6:143929400-143934800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:143929400-143935000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:143929400-143935200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:143929600-143938600	Weak transcription	Fetal Heart	heart
11	chr6:143929600-143941800	Weak transcription	Esophagus	oesophagus
12	chr6:143929600-143943400	Weak transcription	Left Ventricle	heart
13	chr6:143930200-143937800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:143930400-143935400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr6:143930400-143949400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:143930600-143935800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr6:143930800-143946600	Weak transcription	Primary T cells from cord blood	blood
18	chr6:143931200-143935200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:143931200-143935400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:143934400-143934800	Weak transcription	Placenta	Placenta
21	chr6:143934400-143935600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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