Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10457749	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12191296	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12196002	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12199016	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12203367	0.81[ASN][1000 genomes]
rs12204876	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12205130	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12208244	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12210250	0.81[ASN][1000 genomes]
rs12212759	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12213878	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12216096	0.86[EUR][1000 genomes]
rs17368239	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17368267	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2027280	0.81[ASN][1000 genomes]
rs55854171	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919613	0.86[EUR][1000 genomes]
rs72995603	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73003366	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73005383	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744771	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9321924	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9484777	0.83[EUR][1000 genomes]
rs9496677	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1032369	chr6:143925374-144007513	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv604805	chr6:143930404-144005949	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143917000-143973600	Weak transcription	Fetal Intestine Small	intestine
2	chr6:143939000-143955800	Weak transcription	Stomach Mucosa	stomach
3	chr6:143942200-143950600	Weak transcription	Esophagus	oesophagus
4	chr6:143942200-143955600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:143943600-143950400	Weak transcription	Fetal Stomach	stomach
6	chr6:143943800-143950600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:143947400-143950400	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr6:143947400-143951800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:143947400-143955000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr6:143947400-143955200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:143947800-143955000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:143949400-143949800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:143949600-143949800	Enhancers	Primary T cells fromperipheralblood	blood
14	chr6:143949600-143951800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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