Variant report

Variant	rs12203367
Chromosome Location	chr6:143885010-143885011
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143877015..143878661-chr6:143884189..143887146,2	K562	blood:
2	chr6:143883318..143885795-chr6:143891662..143893627,2	MCF-7	breast:
3	chr6:143884802..143886311-chr6:143889517..143891068,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FUCA2-1	chr6:143884953-143885214	NONHSAT115358

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10457749	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190134	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12191296	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196002	0.81[ASN][1000 genomes]
rs12199016	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204876	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205130	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206116	0.81[ASN][1000 genomes]
rs12208244	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210250	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212759	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213878	0.81[ASN][1000 genomes]
rs12216096	0.86[EUR][1000 genomes]
rs13362700	0.82[AFR][1000 genomes]
rs1416209	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17368239	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368267	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027280	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4142502	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55854171	0.81[ASN][1000 genomes]
rs6919613	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72995603	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73003366	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73005383	0.81[ASN][1000 genomes]
rs7744771	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751857	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9321924	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484777	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9496663	0.91[EUR][1000 genomes]
rs9496677	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143866800-143904600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:143875200-143888200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:143878000-143900800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:143878600-143890200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:143878800-143887000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr6:143878800-143902800	Weak transcription	Colonic Mucosa	Colon
7	chr6:143879200-143887800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:143879200-143902800	Weak transcription	Fetal Intestine Large	intestine
9	chr6:143880600-143889600	Weak transcription	NHDF-Ad	bronchial
10	chr6:143880800-143885800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:143882200-143887000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr6:143882400-143887000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:143882800-143886600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:143883000-143885600	Weak transcription	Fetal Heart	heart
15	chr6:143883200-143887600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr6:143883400-143886800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:143883400-143887600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr6:143883600-143886800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr6:143883600-143887000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:143883800-143887400	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr6:143885000-143885800	Weak transcription	Fetal Intestine Small	intestine
22	chr6:143885000-143886400	Enhancers	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links