Variant report

Variant	rs13362700
Chromosome Location	chr6:143889981-143889982
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143832462..143834388-chr6:143888841..143891719,2	MCF-7	breast:
2	chr6:143880018..143883836-chr6:143889367..143892102,3	K562	blood:
3	chr6:143884802..143886311-chr6:143889517..143891068,2	K562	blood:
4	chr6:143880018..143882348-chr6:143889752..143892102,2	K562	blood:

Variant related genes	Relation type
ENSG00000235740	Chromatin interaction
ENSG00000001036	Chromatin interaction

rs_ID	r²[population]
rs12203367	0.82[AFR][1000 genomes]
rs12208244	0.86[AFR][1000 genomes]
rs12210250	0.81[AFR][1000 genomes]
rs6919613	0.80[AFR][1000 genomes]
rs72995603	0.85[AFR][1000 genomes]

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143866800-143904600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:143878000-143900800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:143878600-143890200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:143878800-143902800	Weak transcription	Colonic Mucosa	Colon
5	chr6:143879200-143902800	Weak transcription	Fetal Intestine Large	intestine
6	chr6:143886000-143890000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:143886400-143900400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:143887600-143895000	Weak transcription	Fetal Intestine Small	intestine
9	chr6:143888400-143890000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:143888400-143890200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:143888400-143898600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr6:143888600-143899200	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr6:143888800-143890200	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr6:143888800-143890200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:143889000-143890000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:143889400-143891000	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr6:143889600-143890200	Enhancers	NHDF-Ad	bronchial
18	chr6:143889800-143890000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:143889800-143890400	Weak transcription	GM12878-XiMat	blood
20	chr6:143889800-143891000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:143889800-143891000	Enhancers	Stomach Smooth Muscle	stomach

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