Variant report

Variant	rs2027280
Chromosome Location	chr6:143879781-143879782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143879698..143882158-chr6:144409174..144412151,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10457749	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190134	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12191296	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196002	0.81[ASN][1000 genomes]
rs12199016	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203367	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204876	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205130	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206116	0.81[ASN][1000 genomes]
rs12208160	1.00[CHB][hapmap]
rs12208244	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210250	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212759	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213878	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12216096	0.85[CEU][hapmap];0.81[GIH][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs1416209	0.90[ASN][1000 genomes]
rs17072918	1.00[CHD][hapmap]
rs17368239	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368267	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4142502	1.00[CEU][hapmap];0.81[GIH][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55854171	0.81[ASN][1000 genomes]
rs56381834	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6919613	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6937056	1.00[CHB][hapmap]
rs72995603	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73003366	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73005383	0.81[ASN][1000 genomes]
rs7744771	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751857	0.90[ASN][1000 genomes]
rs9321924	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484777	0.84[EUR][1000 genomes]
rs9496663	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9496677	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2027280	HSS00133441	trans	multi-tissue	Pritchard
rs2027280	AJ227883	cis	multi-tissue	Pritchard
rs2027280	EXOC3	cis	Liver	GTEx

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143866800-143904600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:143868200-143883600	Weak transcription	Gastric	stomach
3	chr6:143875200-143888200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:143875800-143882600	Weak transcription	Left Ventricle	heart
5	chr6:143876200-143884800	Weak transcription	Fetal Stomach	stomach
6	chr6:143876800-143882400	Weak transcription	Fetal Heart	heart
7	chr6:143877000-143883600	Weak transcription	Stomach Mucosa	stomach
8	chr6:143877400-143882600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:143877600-143883000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:143877800-143880200	Weak transcription	NHDF-Ad	bronchial
11	chr6:143878000-143881400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:143878000-143881600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr6:143878000-143881800	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr6:143878000-143900800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:143878200-143881800	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr6:143878200-143881800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr6:143878200-143882000	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr6:143878400-143881600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:143878600-143890200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:143878800-143881800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:143878800-143882400	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr6:143878800-143887000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr6:143878800-143902800	Weak transcription	Colonic Mucosa	Colon
24	chr6:143879000-143881000	Weak transcription	Fetal Intestine Small	intestine
25	chr6:143879200-143881600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr6:143879200-143887800	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr6:143879200-143902800	Weak transcription	Fetal Intestine Large	intestine

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