Variant report

Variant	rs56381834
Chromosome Location	chr6:143856936-143856937
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr6:143855913-143857062	HepG2	liver:	n/a	chr6:143856554-143856566
2	POLR2A	chr6:143853197-143857318	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:143830223..143833460-chr6:143856589..143859655,5	MCF-7	breast:
2	chr6:143770561..143773410-chr6:143856875..143861047,4	MCF-7	breast:
3	chr6:143770495..143772960-chr6:143855460..143857944,2	MCF-7	breast:
4	chr6:143829496..143838775-chr6:143854591..143861568,17	MCF-7	breast:

Variant related genes	Relation type
PHACTR2	TF binding region
ENSG00000189007	Chromatin interaction
ENSG00000223203	Chromatin interaction
ENSG00000034693	Chromatin interaction
ENSG00000001036	Chromatin interaction

rs_ID	r²[population]
rs12190134	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12199016	0.81[AMR][1000 genomes]
rs12204876	0.83[AMR][1000 genomes]
rs12205130	0.85[AMR][1000 genomes]
rs12212759	0.85[AMR][1000 genomes]
rs12213878	0.81[AMR][1000 genomes]
rs2027280	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4142502	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55854171	0.81[AMR][1000 genomes]
rs9496663	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143850400-143857200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr6:143850400-143857400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr6:143850600-143857200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:143850600-143857200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:143850600-143857200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr6:143850600-143857200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr6:143850600-143857200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:143851600-143857000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:143852800-143857400	Weak transcription	Esophagus	oesophagus
10	chr6:143853400-143857200	Weak transcription	Primary T cells from cord blood	blood
11	chr6:143853400-143857400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:143853600-143857000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:143853600-143857400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:143853800-143857200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:143854000-143857600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:143854800-143857200	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr6:143855200-143857200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr6:143855400-143857600	Enhancers	Primary B cells from peripheral blood	blood
19	chr6:143855600-143857600	Enhancers	Primary B cells from cord blood	blood
20	chr6:143855800-143857200	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr6:143855800-143857600	Enhancers	Liver	Liver
22	chr6:143856000-143857200	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr6:143856200-143857200	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr6:143856200-143857400	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr6:143856200-143857400	Weak transcription	Gastric	stomach
26	chr6:143856200-143857400	Enhancers	A549	lung
27	chr6:143856400-143857600	Enhancers	GM12878-XiMat	blood
28	chr6:143856400-143859200	Active TSS	Fetal Intestine Large	intestine
29	chr6:143856600-143857000	Flanking Bivalent TSS/Enh	HepG2	liver
30	chr6:143856600-143857400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr6:143856800-143857000	Flanking Active TSS	Stomach Mucosa	stomach
32	chr6:143856800-143857200	Enhancers	Primary T cells fromperipheralblood	blood
33	chr6:143856800-143857200	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr6:143856800-143857200	Enhancers	Duodenum Mucosa	Duodenum
35	chr6:143856800-143857400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr6:143856800-143858800	Active TSS	Fetal Intestine Small	intestine

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