Variant report

Variant	rs223586
Chromosome Location	chr6:143719278-143719279
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143707751..143710016-chr6:143717710..143720535,2	MCF-7	breast:
2	chr6:143718480..143721227-chr6:143732641..143735012,2	K562	blood:
3	chr6:143709970..143711543-chr6:143717144..143719561,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12208160	1.00[CHB][hapmap]
rs1345991	1.00[ASN][1000 genomes]
rs1364650	1.00[ASN][1000 genomes]
rs1559598	1.00[CHB][hapmap];0.80[TSI][hapmap];1.00[ASN][1000 genomes]
rs1863137	1.00[CHB][hapmap];0.81[MEX][hapmap];0.80[TSI][hapmap];1.00[ASN][1000 genomes]
rs1885649	1.00[CHB][hapmap];0.93[MEX][hapmap]
rs2194655	1.00[ASN][1000 genomes]
rs223604	1.00[ASN][1000 genomes]
rs223606	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs223611	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2328474	1.00[CHB][hapmap]
rs4895609	1.00[ASN][1000 genomes]
rs4896644	1.00[ASN][1000 genomes]
rs4896645	1.00[ASN][1000 genomes]
rs6570555	1.00[ASN][1000 genomes]
rs6901152	0.84[ASW][hapmap];1.00[CHB][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap];1.00[ASN][1000 genomes]
rs6907215	1.00[CHB][hapmap]
rs6917403	1.00[ASN][1000 genomes]
rs6931802	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6933721	0.80[MEX][hapmap]
rs7454731	1.00[ASN][1000 genomes]
rs7738887	1.00[ASN][1000 genomes]
rs7749040	1.00[CHB][hapmap]
rs7760341	1.00[ASN][1000 genomes]
rs7766829	1.00[CHB][hapmap]
rs9373387	1.00[CHB][hapmap]
rs9376739	1.00[CHB][hapmap]
rs9376743	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9376745	1.00[CHB][hapmap];0.80[TSI][hapmap];1.00[ASN][1000 genomes]
rs9403480	1.00[CHB][hapmap];0.93[MEX][hapmap]
rs9496542	1.00[CHB][hapmap]
rs9496677	1.00[CHB][hapmap]
rs972152	1.00[ASN][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143706600-143757400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:143716200-143722400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:143716800-143723600	Enhancers	HMEC	breast
4	chr6:143717000-143720000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:143717000-143723600	Enhancers	NHEK	skin
6	chr6:143717000-143724200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:143717200-143720400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:143717400-143719400	Enhancers	Hela-S3	cervix
9	chr6:143717600-143719400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:143717600-143719400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr6:143717600-143719400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:143717600-143719400	Enhancers	Fetal Intestine Large	intestine
13	chr6:143717600-143719400	Enhancers	Stomach Mucosa	stomach
14	chr6:143717600-143719400	Enhancers	HSMM	muscle
15	chr6:143717600-143719600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:143717600-143720600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:143717600-143720600	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr6:143717600-143723000	Enhancers	Fetal Muscle Leg	muscle
19	chr6:143717800-143719400	Enhancers	Fetal Intestine Small	intestine
20	chr6:143717800-143720000	Enhancers	Fetal Muscle Trunk	muscle
21	chr6:143717800-143720600	Enhancers	Placenta	Placenta
22	chr6:143718000-143719400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:143718000-143720600	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr6:143718200-143719600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:143718400-143719400	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr6:143718400-143719400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:143718400-143721000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr6:143718400-143721400	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr6:143718600-143719400	Enhancers	Primary T cells fromperipheralblood	blood
30	chr6:143718600-143719600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr6:143718600-143721400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr6:143718600-143722400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:143718800-143720400	Weak transcription	Fetal Brain Female	brain
34	chr6:143718800-143720600	Enhancers	NH-A	brain
35	chr6:143718800-143721000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr6:143718800-143721200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr6:143718800-143722400	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr6:143718800-143722600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr6:143718800-143723600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr6:143719000-143719800	Weak transcription	Fetal Brain Male	brain
41	chr6:143719000-143720200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr6:143719000-143721200	Weak transcription	Fetal Lung	lung
43	chr6:143719000-143721400	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr6:143719000-143721600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr6:143719000-143721600	Weak transcription	Fetal Heart	heart
46	chr6:143719000-143721600	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr6:143719000-143723000	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr6:143719200-143720200	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr6:143719200-143720600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr6:143719200-143721000	Enhancers	HepG2	liver

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