Variant report

Variant	rs6930404
Chromosome Location	chr6:143609180-143609181
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143597460..143598966-chr6:143607204..143609984,2	K562	blood:
2	chr6:143603471..143605267-chr6:143607615..143610028,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1345991	0.82[AMR][1000 genomes]
rs1364650	0.83[AMR][1000 genomes]
rs1559598	0.83[EUR][1000 genomes]
rs1863137	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1885649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2194655	0.83[AMR][1000 genomes]
rs2216917	0.83[AMR][1000 genomes]
rs2328474	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895609	0.83[AMR][1000 genomes]
rs4896644	0.88[AMR][1000 genomes]
rs4896645	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6570555	0.83[AMR][1000 genomes]
rs6901152	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6907215	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917403	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7454731	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7738887	0.83[AMR][1000 genomes]
rs7749040	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760341	0.83[AMR][1000 genomes]
rs7766829	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373387	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373390	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9376739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376743	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9376745	0.83[EUR][1000 genomes]
rs9403480	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496542	0.86[EUR][1000 genomes]
rs972152	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3474294	chr6:143606767-143611394	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3474295	chr6:143606932-143611286	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143570800-143609200	Weak transcription	Fetal Intestine Large	intestine
2	chr6:143583800-143615400	Weak transcription	K562	blood
3	chr6:143598600-143620200	Weak transcription	Brain Angular Gyrus	brain
4	chr6:143600600-143609200	Weak transcription	Brain Anterior Caudate	brain
5	chr6:143603000-143611000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:143603200-143609600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:143603200-143616800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:143603200-143622200	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:143604800-143609200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:143605200-143610400	Strong transcription	Liver	Liver
11	chr6:143605400-143614600	Weak transcription	NHDF-Ad	bronchial
12	chr6:143605600-143622000	Weak transcription	HepG2	liver
13	chr6:143605800-143609400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr6:143606200-143609400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:143606600-143609200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr6:143606600-143609200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:143606800-143609200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:143606800-143611400	Weak transcription	Fetal Intestine Small	intestine
19	chr6:143607000-143609400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:143607200-143609400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr6:143607600-143622200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:143608000-143609200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr6:143608200-143609200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr6:143608200-143611400	Weak transcription	Lung	lung
25	chr6:143608400-143609400	Enhancers	Fetal Heart	heart
26	chr6:143608400-143610800	Weak transcription	NH-A	brain
27	chr6:143608400-143611200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:143608400-143620800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr6:143608600-143609800	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr6:143608600-143620800	Weak transcription	Left Ventricle	heart
31	chr6:143608600-143624200	Weak transcription	Aorta	Aorta
32	chr6:143608800-143610600	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr6:143608800-143612400	Weak transcription	Fetal Stomach	stomach
34	chr6:143608800-143619800	Weak transcription	HMEC	breast
35	chr6:143608800-143624200	Weak transcription	Ovary	ovary
36	chr6:143608800-143629400	Weak transcription	NHEK	skin
37	chr6:143609000-143609400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:143609000-143611400	Enhancers	HUES64 Cell Line	embryonic stem cell

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