Variant report

Variant	rs10214931
Chromosome Location	chr7:7844605-7844606
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:7844473..7848021-chr7:8007185..8010732,4	MCF-7	breast:
2	chr7:7844367..7846039-chr7:7848533..7850717,2	K562	blood:
3	chr7:7843600..7848661-chr7:7848887..7852030,4	K562	blood:

Variant related genes	Relation type
ENSG00000106415	Chromatin interaction
ENSG00000233108	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17137697	1.00[JPT][hapmap]
rs17494426	1.00[JPT][hapmap]
rs7801961	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv606042	chr7:7427535-7876466	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv1032670	chr7:7535515-8017077	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv8043	chr7:7589195-7862802	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv887478	chr7:7670718-7917360	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	nsv887480	chr7:7681131-7917360	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv887485	chr7:7692483-7917360	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	esv2752177	chr7:7729247-8177689	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	nsv1026564	chr7:7734846-7897847	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv887489	chr7:7770203-7913311	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv1027770	chr7:7797431-7957507	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
12	nsv538722	chr7:7797431-7957507	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv887490	chr7:7801684-7908970	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
14	nsv523479	chr7:7821594-7909899	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:7805400-7854400	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr7:7812400-7854600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr7:7820000-7854600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr7:7822800-7856000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr7:7823200-7855200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr7:7823400-7848000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr7:7825400-7845200	Weak transcription	Thymus	Thymus
8	chr7:7825400-7854400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr7:7825400-7855400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr7:7825600-7864400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr7:7830800-7844800	Weak transcription	Right Ventricle	heart
12	chr7:7831000-7856200	Weak transcription	Lung	lung
13	chr7:7832000-7845400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr7:7832000-7869200	Weak transcription	HSMMtube	muscle
15	chr7:7832400-7869400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr7:7832600-7845000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr7:7832600-7856400	Weak transcription	Fetal Muscle Leg	muscle
18	chr7:7833200-7854400	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr7:7833400-7854800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr7:7834000-7852800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr7:7834200-7847600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr7:7834400-7856200	Weak transcription	Adipose Nuclei	Adipose
23	chr7:7835200-7845000	Weak transcription	Liver	Liver
24	chr7:7835800-7855200	Weak transcription	Stomach Smooth Muscle	stomach
25	chr7:7836000-7869400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr7:7836400-7847600	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr7:7836600-7854400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr7:7836800-7845200	Weak transcription	Fetal Thymus	thymus
29	chr7:7837000-7854400	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr7:7837000-7854400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr7:7837200-7854600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr7:7837200-7855400	Weak transcription	Primary hematopoietic stem cells	blood
33	chr7:7837200-7876400	Weak transcription	Aorta	Aorta
34	chr7:7837200-7883400	Weak transcription	Left Ventricle	heart
35	chr7:7838400-7845000	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr7:7838400-7855200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr7:7838600-7851200	Weak transcription	Pancreas	Pancrea
38	chr7:7839600-7845200	Weak transcription	Hela-S3	cervix
39	chr7:7843400-7844800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr7:7843400-7860600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr7:7843600-7845400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr7:7843800-7845000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr7:7843800-7845400	Weak transcription	A549	lung
44	chr7:7843800-7847600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr7:7843800-7847800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr7:7843800-7854400	Weak transcription	Primary T cells from cord blood	blood
47	chr7:7844200-7846200	Enhancers	Primary B cells from peripheral blood	blood
48	chr7:7844400-7846800	Enhancers	Primary B cells from cord blood	blood
49	chr7:7844600-7844800	Active TSS	GM12878-XiMat	blood

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