Variant report

Variant	rs17137697
Chromosome Location	chr7:7825370-7825371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:7824985..7826760-chr7:8008424..8010467,2	MCF-7	breast:
2	chr7:7822910..7826259-chr7:7826483..7829918,3	K562	blood:
3	chr7:7823858..7826259-chr7:7827285..7831202,4	K562	blood:

Variant related genes	Relation type
ENSG00000233108	Chromatin interaction
ENSG00000106415	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10214931	1.00[JPT][hapmap]
rs10234567	1.00[CHD][hapmap]
rs10251718	1.00[CHD][hapmap]
rs17169196	1.00[CHD][hapmap]
rs17468300	1.00[CEU][hapmap]
rs17494426	1.00[JPT][hapmap]
rs17550944	1.00[CEU][hapmap]
rs28568990	1.00[ASN][1000 genomes]
rs28916280	1.00[CHD][hapmap]
rs57771369	1.00[ASN][1000 genomes]
rs57831171	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73673827	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv606042	chr7:7427535-7876466	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv1032670	chr7:7535515-8017077	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv8043	chr7:7589195-7862802	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv887478	chr7:7670718-7917360	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	nsv887480	chr7:7681131-7917360	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv887485	chr7:7692483-7917360	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	esv2752177	chr7:7729247-8177689	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	nsv1026564	chr7:7734846-7897847	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv887489	chr7:7770203-7913311	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv1027770	chr7:7797431-7957507	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
12	nsv538722	chr7:7797431-7957507	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv887490	chr7:7801684-7908970	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
14	nsv523479	chr7:7821594-7909899	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:7802400-7829800	Weak transcription	Left Ventricle	heart
2	chr7:7802400-7841400	Weak transcription	Ovary	ovary
3	chr7:7802600-7836600	Weak transcription	Aorta	Aorta
4	chr7:7805400-7854400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr7:7812400-7854600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr7:7813800-7829400	Weak transcription	Primary T cells from cord blood	blood
7	chr7:7814000-7828600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr7:7814600-7830800	Weak transcription	Primary B cells from peripheral blood	blood
9	chr7:7814800-7829400	Weak transcription	Primary B cells from cord blood	blood
10	chr7:7817800-7829800	Weak transcription	HMEC	breast
11	chr7:7820000-7836600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr7:7820000-7854600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr7:7820400-7829400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr7:7822800-7832400	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr7:7822800-7856000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr7:7823200-7828400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr7:7823200-7830600	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr7:7823200-7833000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr7:7823200-7836600	Weak transcription	Fetal Thymus	thymus
20	chr7:7823200-7855200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr7:7823400-7826000	Weak transcription	Brain Germinal Matrix	brain
22	chr7:7823400-7829800	Weak transcription	Hela-S3	cervix
23	chr7:7823400-7835600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr7:7823400-7839000	Weak transcription	Brain Angular Gyrus	brain
25	chr7:7823400-7848000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr7:7823600-7831200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr7:7823600-7831200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr7:7823600-7843000	Weak transcription	Brain Hippocampus Middle	brain
29	chr7:7823800-7842800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr7:7824600-7825400	Enhancers	Fetal Intestine Large	intestine
31	chr7:7824600-7825600	Enhancers	Fetal Intestine Small	intestine
32	chr7:7824800-7825400	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr7:7824800-7825400	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr7:7824800-7825400	Enhancers	Sigmoid Colon	Sigmoid Colon
35	chr7:7825000-7825400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:7825000-7825400	Active TSS	Rectal Mucosa Donor 29	rectum
37	chr7:7825000-7825400	Enhancers	Thymus	Thymus
38	chr7:7825000-7825600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr7:7825200-7825400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr7:7825200-7825400	Enhancers	Pancreas	Pancrea
41	chr7:7825200-7828000	Enhancers	Dnd41	blood

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