Variant report

Variant	rs17550944
Chromosome Location	chr7:7812359-7812360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:7809766..7812689-chr7:8007861..8010451,3	MCF-7	breast:
2	chr7:7812171..7814955-chr7:7815410..7818878,3	K562	blood:

Variant related genes	Relation type
ENSG00000233108	Chromatin interaction
ENSG00000106415	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11976397	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17137697	1.00[CEU][hapmap]
rs17468300	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv606042	chr7:7427535-7876466	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv1032670	chr7:7535515-8017077	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv8043	chr7:7589195-7862802	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv887478	chr7:7670718-7917360	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	nsv887480	chr7:7681131-7917360	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv887485	chr7:7692483-7917360	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	esv2752177	chr7:7729247-8177689	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	nsv1026564	chr7:7734846-7897847	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv887489	chr7:7770203-7913311	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv1027770	chr7:7797431-7957507	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
12	nsv538722	chr7:7797431-7957507	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv887490	chr7:7801684-7908970	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:7802400-7829800	Weak transcription	Left Ventricle	heart
2	chr7:7802400-7841400	Weak transcription	Ovary	ovary
3	chr7:7802600-7836600	Weak transcription	Aorta	Aorta
4	chr7:7805400-7854400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr7:7807600-7819000	Weak transcription	Stomach Mucosa	stomach
6	chr7:7808000-7813600	Weak transcription	Hela-S3	cervix
7	chr7:7809400-7813400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:7810200-7813400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:7810800-7812600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:7811000-7812600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr7:7811000-7812800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr7:7811600-7812400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr7:7811600-7814000	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr7:7811800-7812400	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr7:7811800-7812400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
16	chr7:7811800-7812400	Enhancers	Colon Smooth Muscle	Colon
17	chr7:7811800-7812400	Enhancers	Rectal Smooth Muscle	rectum
18	chr7:7811800-7812600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:7811800-7812600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
20	chr7:7811800-7812600	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr7:7811800-7812800	Enhancers	Brain Cingulate Gyrus	brain
22	chr7:7811800-7813000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:7811800-7813000	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr7:7811800-7813800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:7811800-7813800	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr7:7811800-7814000	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr7:7811800-7814200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr7:7811800-7814200	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr7:7812000-7812400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr7:7812000-7812400	Active TSS	Brain Anterior Caudate	brain
31	chr7:7812000-7812400	Flanking Active TSS	Brain Hippocampus Middle	brain
32	chr7:7812000-7812400	Flanking Active TSS	HSMM	muscle
33	chr7:7812000-7812400	Flanking Active TSS	NH-A	brain
34	chr7:7812000-7812400	Active TSS	NHEK	skin
35	chr7:7812000-7812600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
36	chr7:7812000-7812600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr7:7812000-7812600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr7:7812000-7812600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr7:7812000-7812600	Active TSS	Stomach Smooth Muscle	stomach
40	chr7:7812000-7812600	Flanking Active TSS	Dnd41	blood
41	chr7:7812000-7812600	Active TSS	HMEC	breast
42	chr7:7812000-7812600	Flanking Active TSS	Osteobl	bone
43	chr7:7812000-7812800	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr7:7812000-7812800	Flanking Active TSS	Primary T cells from cord blood	blood
45	chr7:7812000-7812800	Enhancers	Brain Substantia Nigra	brain
46	chr7:7812000-7812800	Active TSS	Pancreatic Islets	Pancreatic Islet
47	chr7:7812000-7813000	Flanking Active TSS	GM12878-XiMat	blood
48	chr7:7812000-7814000	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr7:7812000-7814200	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr7:7812000-7814200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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