Variant report
| Variant | rs10216166 |
|---|---|
| Chromosome Location | chr7:25256687-25256688 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:90)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
(count:6 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:25219298..25221104-chr7:25254526..25257148,2 | K562 | blood: | |
| 2 | chr7:25219514..25220543-chr7:25255978..25256993,5 | K562 | blood: | |
| 3 | chr7:25199215..25199746-chr7:25256226..25256869,2 | MCF-7 | breast: | |
| 4 | chr7:25164198..25165934-chr7:25256419..25258186,2 | K562 | blood: | |
| 5 | chr7:25254943..25257850-chr7:25260615..25262250,2 | K562 | blood: | |
| 6 | chr7:25256547..25257067-chr7:25608230..25609163,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000213798 | TF binding region |
| ENSG00000153790 | Chromatin interaction |
| ENSG00000172115 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs10215910 | 0.92[AFR][1000 genomes] |
| rs10215921 | 0.92[AFR][1000 genomes] |
| rs10231361 | 1.00[AMR][1000 genomes] |
| rs10245125 | 1.00[AMR][1000 genomes] |
| rs10248877 | 1.00[AMR][1000 genomes] |
| rs10249305 | 0.88[AFR][1000 genomes] |
| rs10255793 | 1.00[AMR][1000 genomes] |
| rs10273264 | 0.85[AFR][1000 genomes] |
| rs28862590 | 0.85[AFR][1000 genomes] |
| rs35032418 | 0.85[AFR][1000 genomes] |
| rs57246232 | 1.00[AMR][1000 genomes] |
| rs9785012 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv606424 | chr7:24982529-25466521 | Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 79 gene(s) | inside rSNPs | diseases |
| 2 | nsv887845 | chr7:25220519-25276424 | Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv606426 | chr7:25254125-25621579 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:25256000-25260400 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
