Variant report

Variant	rs28862590
Chromosome Location	chr7:25243134-25243135
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10156062	1.00[AMR][1000 genomes]
rs10215910	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10215921	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10216166	0.85[AFR][1000 genomes]
rs10249305	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10273264	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11977304	1.00[AMR][1000 genomes]
rs11983264	1.00[AMR][1000 genomes]
rs28548195	1.00[AMR][1000 genomes]
rs28628739	1.00[AMR][1000 genomes]
rs28851776	1.00[AMR][1000 genomes]
rs28856628	1.00[AMR][1000 genomes]
rs35032418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv887845	chr7:25220519-25276424	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25238000-25243800	Weak transcription	Stomach Mucosa	stomach
2	chr7:25238600-25246200	Weak transcription	Gastric	stomach
3	chr7:25239800-25244800	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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