Variant report

Variant	rs28628739
Chromosome Location	chr7:25207779-25207780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:25205949..25208409-chr7:25210693..25212938,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10156062	1.00[AMR][1000 genomes]
rs10215910	1.00[AMR][1000 genomes]
rs10215921	1.00[AMR][1000 genomes]
rs10249305	1.00[AMR][1000 genomes]
rs10273264	1.00[AMR][1000 genomes]
rs11977304	1.00[AMR][1000 genomes]
rs11983264	1.00[AMR][1000 genomes]
rs28548195	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28851776	1.00[AMR][1000 genomes]
rs28856628	1.00[AMR][1000 genomes]
rs28862590	1.00[AMR][1000 genomes]
rs35032418	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25165400-25209800	Weak transcription	Spleen	Spleen
2	chr7:25165600-25213000	Weak transcription	Small Intestine	intestine
3	chr7:25165600-25218800	Weak transcription	Colonic Mucosa	Colon
4	chr7:25165600-25219200	Weak transcription	Left Ventricle	heart
5	chr7:25165800-25219000	Weak transcription	Fetal Lung	lung
6	chr7:25166000-25218800	Weak transcription	Brain Anterior Caudate	brain
7	chr7:25168000-25218800	Weak transcription	Gastric	stomach
8	chr7:25172400-25218800	Weak transcription	GM12878-XiMat	blood
9	chr7:25172600-25218600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr7:25179800-25218800	Weak transcription	Pancreas	Pancrea
11	chr7:25190000-25218800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:25190200-25219000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr7:25191800-25209400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:25192200-25218800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr7:25192200-25218800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr7:25194200-25209000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr7:25194400-25208400	Weak transcription	Fetal Muscle Leg	muscle
18	chr7:25194400-25219000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr7:25194800-25210000	Weak transcription	Fetal Stomach	stomach
20	chr7:25194800-25212800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr7:25194800-25218800	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr7:25194800-25218800	Weak transcription	Thymus	Thymus
23	chr7:25194800-25219200	Weak transcription	Ovary	ovary
24	chr7:25195000-25218800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr7:25196000-25218800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr7:25197000-25218800	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr7:25197400-25218600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr7:25197600-25218800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr7:25198000-25207800	Weak transcription	Duodenum Mucosa	Duodenum
30	chr7:25199200-25219000	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr7:25204000-25218800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr7:25204200-25209000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr7:25204400-25219000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr7:25204600-25214800	Weak transcription	Primary T cells from cord blood	blood
35	chr7:25204800-25208200	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr7:25205600-25208800	Weak transcription	Lung	lung
37	chr7:25205600-25218800	Weak transcription	Adipose Nuclei	Adipose
38	chr7:25205800-25218800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr7:25205800-25219200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr7:25206000-25219000	Weak transcription	Aorta	Aorta
41	chr7:25206400-25208200	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr7:25206800-25208200	Enhancers	Fetal Intestine Large	intestine
43	chr7:25206800-25208200	Enhancers	Fetal Intestine Small	intestine
44	chr7:25207000-25208200	Enhancers	Liver	Liver
45	chr7:25207000-25218800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr7:25207200-25218600	Weak transcription	Dnd41	blood
47	chr7:25207400-25209600	Weak transcription	Primary B cells from cord blood	blood
48	chr7:25207400-25218800	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr7:25207600-25208000	Weak transcription	Stomach Mucosa	stomach
50	chr7:25207600-25208200	Enhancers	Rectal Mucosa Donor 29	rectum

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