Variant report

Variant	rs10156062
Chromosome Location	chr7:25203195-25203196
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:25200411..25202128-chr7:25202596..25205478,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10215910	1.00[AMR][1000 genomes]
rs10215921	1.00[AMR][1000 genomes]
rs10249305	1.00[AMR][1000 genomes]
rs10273264	1.00[AMR][1000 genomes]
rs11977304	1.00[AMR][1000 genomes]
rs11983264	1.00[AMR][1000 genomes]
rs28548195	1.00[AMR][1000 genomes]
rs28628739	1.00[AMR][1000 genomes]
rs28851776	1.00[AMR][1000 genomes]
rs28856628	1.00[AMR][1000 genomes]
rs28862590	1.00[AMR][1000 genomes]
rs35032418	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25165400-25209800	Weak transcription	Spleen	Spleen
2	chr7:25165600-25213000	Weak transcription	Small Intestine	intestine
3	chr7:25165600-25218800	Weak transcription	Colonic Mucosa	Colon
4	chr7:25165600-25219200	Weak transcription	Left Ventricle	heart
5	chr7:25165800-25219000	Weak transcription	Fetal Lung	lung
6	chr7:25166000-25218800	Weak transcription	Brain Anterior Caudate	brain
7	chr7:25168000-25206800	Weak transcription	Fetal Intestine Small	intestine
8	chr7:25168000-25218800	Weak transcription	Gastric	stomach
9	chr7:25172400-25218800	Weak transcription	GM12878-XiMat	blood
10	chr7:25172600-25218600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr7:25179800-25218800	Weak transcription	Pancreas	Pancrea
12	chr7:25186200-25206800	Weak transcription	Stomach Mucosa	stomach
13	chr7:25188800-25207000	Weak transcription	Liver	Liver
14	chr7:25189800-25207000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr7:25190000-25218800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:25190200-25219000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr7:25191800-25209400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:25192200-25218800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr7:25192200-25218800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr7:25192400-25204000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr7:25193800-25206600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr7:25194200-25205000	Weak transcription	Adipose Nuclei	Adipose
23	chr7:25194200-25206800	Weak transcription	Primary B cells from cord blood	blood
24	chr7:25194200-25207200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr7:25194200-25209000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr7:25194400-25208400	Weak transcription	Fetal Muscle Leg	muscle
27	chr7:25194400-25219000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr7:25194600-25206400	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr7:25194800-25203200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr7:25194800-25203200	Weak transcription	Aorta	Aorta
31	chr7:25194800-25203200	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr7:25194800-25205200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr7:25194800-25205200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr7:25194800-25205200	Weak transcription	Lung	lung
35	chr7:25194800-25210000	Weak transcription	Fetal Stomach	stomach
36	chr7:25194800-25212800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr7:25194800-25218800	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr7:25194800-25218800	Weak transcription	Thymus	Thymus
39	chr7:25194800-25219200	Weak transcription	Ovary	ovary
40	chr7:25195000-25204800	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr7:25195000-25218800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr7:25196000-25218800	Weak transcription	Primary hematopoietic stem cells	blood
43	chr7:25197000-25218800	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr7:25197400-25204800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr7:25197400-25218600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr7:25197600-25218800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr7:25198000-25207800	Weak transcription	Duodenum Mucosa	Duodenum
48	chr7:25199000-25203200	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr7:25199000-25206800	Weak transcription	Fetal Intestine Large	intestine
50	chr7:25199200-25203800	Weak transcription	Primary B cells from peripheral blood	blood

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