Variant report

Variant	rs28548195
Chromosome Location	chr7:25228884-25228885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10156062	1.00[AMR][1000 genomes]
rs10215910	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10215921	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10249305	1.00[AMR][1000 genomes]
rs10273264	1.00[AMR][1000 genomes]
rs11977304	1.00[AMR][1000 genomes]
rs11983264	1.00[AMR][1000 genomes]
rs28628739	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28851776	1.00[AMR][1000 genomes]
rs28856628	1.00[AMR][1000 genomes]
rs28862590	1.00[AMR][1000 genomes]
rs35032418	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv887845	chr7:25220519-25276424	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25220600-25233200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:25220600-25233800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:25226000-25230200	Enhancers	HepG2	liver
4	chr7:25226600-25230600	Weak transcription	Stomach Mucosa	stomach
5	chr7:25226800-25230000	Weak transcription	Gastric	stomach
6	chr7:25228600-25229200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr7:25228800-25229000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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