Variant report

Variant	rs10216375
Chromosome Location	chr8:127836765-127836766
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:127836631..127837289-chr8:127881392..127882026,2	MCF-7	breast:
2	chr8:127834592..127842945-chr8:128745185..128752445,14	MCF-7	breast:
3	chr8:127836311..127837281-chr8:127888680..127889401,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136997	Chromatin interaction
ENSG00000249375	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13270320	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13279644	1.00[ASW][hapmap];0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16901732	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16901733	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59903817	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60087888	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6983330	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6983660	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6984346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6984351	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6989873	1.00[ASW][hapmap];0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6990128	1.00[ASW][hapmap];0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6992587	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6994585	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7003659	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7003931	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7003948	0.87[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891438	chr8:127670339-127845702	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv1819408	chr8:127835876-127898165	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv1851585	chr8:127836077-127838244	Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1846092	chr8:127836077-127838825	Active TSS Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1848524	chr8:127836277-127838744	Active TSS Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:127827000-127837200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:127833200-127837000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:127833600-127836800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr8:127833600-127839800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:127833800-127837000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr8:127833800-127837000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr8:127834000-127836800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr8:127834200-127836800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:127836200-127836800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr8:127836400-127836800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr8:127836400-127836800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:127836400-127836800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr8:127836400-127836800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr8:127836400-127836800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:127836400-127836800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr8:127836400-127836800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr8:127836400-127836800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:127836400-127836800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr8:127836400-127836800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr8:127836400-127836800	Enhancers	Fetal Muscle Leg	muscle
21	chr8:127836400-127836800	Enhancers	HSMMtube	muscle
22	chr8:127836400-127836800	Enhancers	HUVEC	blood vessel
23	chr8:127836400-127836800	Enhancers	NH-A	brain
24	chr8:127836400-127836800	Flanking Active TSS	NHDF-Ad	bronchial
25	chr8:127836400-127836800	Enhancers	NHEK	skin
26	chr8:127836400-127837000	Enhancers	Fetal Heart	heart
27	chr8:127836400-127837000	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr8:127836400-127837000	Active TSS	K562	blood
29	chr8:127836400-127837000	Enhancers	NHLF	lung
30	chr8:127836600-127836800	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr8:127836600-127836800	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr8:127836600-127836800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr8:127836600-127836800	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr8:127836600-127836800	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr8:127836600-127836800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr8:127836600-127836800	Enhancers	Brain Anterior Caudate	brain
37	chr8:127836600-127836800	Enhancers	Brain Cingulate Gyrus	brain
38	chr8:127836600-127836800	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr8:127836600-127836800	Enhancers	Fetal Lung	lung
40	chr8:127836600-127836800	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr8:127836600-127836800	Flanking Active TSS	A549	lung
42	chr8:127836600-127836800	Enhancers	HMEC	breast
43	chr8:127836600-127836800	Enhancers	HSMM	muscle
44	chr8:127836600-127836800	Flanking Active TSS	Osteobl	bone
45	chr8:127836600-127837000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr8:127836600-127837000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr8:127836600-127837400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr8:127836600-127837400	Active TSS	Colon Smooth Muscle	Colon
49	chr8:127836600-127837400	Enhancers	Dnd41	blood
50	chr8:127836600-127837400	Flanking Active TSS	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links