Variant report

Variant	rs13279644
Chromosome Location	chr8:127839806-127839807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:127834592..127842945-chr8:128745185..128752445,14	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249375	Chromatin interaction
ENSG00000136997	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10216375	1.00[ASW][hapmap];0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13270320	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16901732	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16901733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59903817	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60087888	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6983330	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6983660	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6984346	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6984351	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6989873	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990128	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6992587	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6994585	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7003659	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7003931	1.00[ASW][hapmap];0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7003948	0.92[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891438	chr8:127670339-127845702	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv1819408	chr8:127835876-127898165	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:127837200-127840000	Weak transcription	Fetal Thymus	thymus
2	chr8:127837400-127840000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:127837400-127840000	Weak transcription	Fetal Lung	lung
4	chr8:127837400-127840200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:127837400-127840400	Weak transcription	Left Ventricle	heart
6	chr8:127837400-127840600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr8:127837400-127841200	Enhancers	Fetal Heart	heart
8	chr8:127837400-127841400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:127837400-127841400	Enhancers	Fetal Muscle Leg	muscle
10	chr8:127837400-127842800	Enhancers	NHLF	lung
11	chr8:127837400-127843800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr8:127837600-127840000	Weak transcription	Fetal Intestine Small	intestine
13	chr8:127837600-127840400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:127837600-127840400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr8:127837600-127840400	Weak transcription	Right Atrium	heart
16	chr8:127837600-127841200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr8:127837600-127841400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:127837800-127840000	Weak transcription	Fetal Kidney	kidney
19	chr8:127837800-127840400	Enhancers	HSMMtube	muscle
20	chr8:127837800-127845600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr8:127837800-127845800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr8:127837800-127845800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr8:127838000-127840200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr8:127838000-127840200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr8:127838000-127840200	Weak transcription	NHDF-Ad	bronchial
26	chr8:127838000-127840400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr8:127838000-127845400	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr8:127838000-127845400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr8:127838200-127840000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr8:127838200-127845400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr8:127839200-127840400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr8:127839200-127840400	Enhancers	HSMM	muscle
33	chr8:127839200-127840400	Enhancers	NHEK	skin
34	chr8:127839200-127841000	Enhancers	Placenta	Placenta
35	chr8:127839200-127841200	Enhancers	NH-A	brain
36	chr8:127839200-127843400	Enhancers	HUVEC	blood vessel
37	chr8:127839400-127841000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr8:127839400-127841400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr8:127839400-127841800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr8:127839600-127840000	Enhancers	Osteobl	bone
41	chr8:127839600-127840800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr8:127839600-127840800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr8:127839600-127840800	Enhancers	Placenta Amnion	Placenta Amnion
44	chr8:127839600-127841000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr8:127839600-127841000	Enhancers	HMEC	breast
46	chr8:127839800-127840400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr8:127839800-127841000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr8:127839800-127841000	Enhancers	Fetal Stomach	stomach

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