Variant report

Variant	rs10217715
Chromosome Location	chr9:102828559-102828560
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102827084..102829968-chr9:102832017..102833551,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10988947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12346672	0.83[ASN][1000 genomes]
rs55767211	1.00[ASN][1000 genomes]
rs56081149	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61548089	1.00[ASN][1000 genomes]
rs72731390	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72746321	1.00[AFR][1000 genomes]
rs72746326	1.00[AFR][1000 genomes]
rs72746345	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102767600-102845600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:102767800-102830000	Weak transcription	HSMMtube	muscle
3	chr9:102767800-102835600	Weak transcription	Brain Hippocampus Middle	brain
4	chr9:102796400-102828800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr9:102800000-102828800	Weak transcription	Aorta	Aorta
6	chr9:102800000-102828800	Weak transcription	Gastric	stomach
7	chr9:102800000-102828800	Weak transcription	Pancreas	Pancrea
8	chr9:102800000-102828800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr9:102800000-102860200	Weak transcription	Esophagus	oesophagus
10	chr9:102800200-102828800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr9:102800200-102836400	Weak transcription	Fetal Stomach	stomach
12	chr9:102802400-102829000	Weak transcription	Psoas Muscle	Psoas
13	chr9:102805400-102844800	Weak transcription	Thymus	Thymus
14	chr9:102807400-102844800	Weak transcription	Fetal Brain Male	brain
15	chr9:102809600-102828600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr9:102809600-102828600	Weak transcription	Brain Substantia Nigra	brain
17	chr9:102809800-102845600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr9:102810000-102839200	Weak transcription	Fetal Muscle Leg	muscle
19	chr9:102810800-102845400	Weak transcription	Fetal Brain Female	brain
20	chr9:102814000-102829000	Weak transcription	Left Ventricle	heart
21	chr9:102814200-102829200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr9:102814200-102842400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr9:102814200-102842600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr9:102814600-102828600	Weak transcription	Adipose Nuclei	Adipose
25	chr9:102814600-102834200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr9:102818000-102842000	Weak transcription	Spleen	Spleen
27	chr9:102818400-102828800	Weak transcription	Right Ventricle	heart
28	chr9:102819800-102829000	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr9:102820200-102842800	Weak transcription	HepG2	liver
30	chr9:102820800-102837400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr9:102820800-102846000	Weak transcription	Primary T cells from cord blood	blood
32	chr9:102821000-102845600	Weak transcription	Primary hematopoietic stem cells	blood
33	chr9:102821800-102837000	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr9:102822000-102828600	Weak transcription	Dnd41	blood
35	chr9:102822000-102828800	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr9:102822000-102828800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr9:102822000-102828800	Weak transcription	Duodenum Mucosa	Duodenum
38	chr9:102822000-102829000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr9:102822000-102829200	Weak transcription	Fetal Intestine Large	intestine
40	chr9:102822000-102833000	Weak transcription	Ovary	ovary
41	chr9:102822000-102838600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr9:102822000-102844000	Weak transcription	Fetal Thymus	thymus
43	chr9:102822000-102845800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr9:102822000-102849000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr9:102822200-102829000	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr9:102822200-102829800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr9:102822400-102842600	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr9:102822400-102844000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr9:102822600-102829000	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr9:102823400-102829000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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