Variant report

Variant	rs56081149
Chromosome Location	chr9:102919692-102919693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10217715	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10988947	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12346672	0.83[ASN][1000 genomes]
rs55767211	1.00[ASN][1000 genomes]
rs61548089	1.00[ASN][1000 genomes]
rs72731390	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72746321	1.00[AFR][1000 genomes]
rs72746326	1.00[AFR][1000 genomes]
rs72746345	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102874200-102937600	Weak transcription	Aorta	Aorta
2	chr9:102879800-102935000	Weak transcription	Ovary	ovary
3	chr9:102883000-102937600	Weak transcription	Fetal Intestine Large	intestine
4	chr9:102883800-102928400	Weak transcription	Primary T cells from cord blood	blood
5	chr9:102885200-102932600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:102886000-102931600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:102887800-102922200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr9:102889200-102936000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr9:102889600-102934600	Weak transcription	Fetal Intestine Small	intestine
10	chr9:102891800-102935200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr9:102893000-102934600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr9:102893800-102936200	Weak transcription	Primary B cells from cord blood	blood
13	chr9:102895200-102920600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:102912400-102937800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr9:102912800-102936200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:102913200-102924600	Weak transcription	NHLF	lung
17	chr9:102913200-102935400	Weak transcription	Fetal Lung	lung
18	chr9:102913400-102930000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr9:102914400-102932000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr9:102914600-102940600	Weak transcription	HSMMtube	muscle
21	chr9:102915200-102934800	Weak transcription	Fetal Muscle Leg	muscle
22	chr9:102915200-102935400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr9:102915800-102922000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr9:102916200-102923800	Weak transcription	Spleen	Spleen
25	chr9:102916200-102935400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr9:102916200-102941400	Weak transcription	HepG2	liver
27	chr9:102916400-102932400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr9:102916400-102934800	Weak transcription	Left Ventricle	heart
29	chr9:102916400-102938200	Weak transcription	Adipose Nuclei	Adipose
30	chr9:102917400-102935000	Weak transcription	Liver	Liver
31	chr9:102917400-102936000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr9:102918200-102930800	Weak transcription	Gastric	stomach
33	chr9:102918800-102922400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr9:102918800-102924800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:102919400-102936000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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