Variant report
| Variant | rs10219425 |
|---|---|
| Chromosome Location | chr11:32484780-32484781 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:32455594..32457792-chr11:32483688..32485751,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000183242 | Chromatin interaction |
| ENSG00000184937 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10835911 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs10835916 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs10835917 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10835920 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11031791 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11031792 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11031793 | 0.87[EUR][1000 genomes] |
| rs11031796 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2418931 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs3858454 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs3858455 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs3858456 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs3858459 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3930317 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs4275604 | 0.86[EUR][1000 genomes] |
| rs4304749 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs4980793 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7103000 | 0.87[EUR][1000 genomes] |
| rs7126322 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7395210 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7944133 | 0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7948813 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832108 | chr11:32395937-32560583 | Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 2 | esv2753303 | chr11:32447324-32494924 | Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:32469000-32487800 | Weak transcription | Ovary | ovary |
| 2 | chr11:32475200-32487600 | Weak transcription | Fetal Kidney | kidney |
