Variant report

Variant	rs10219684
Chromosome Location	chr12:10026944-10026945
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10844994	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10844998	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1814494	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1814495	0.87[ASN][1000 genomes]
rs4285965	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4287401	0.95[ASN][1000 genomes]
rs4764045	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4764046	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4764047	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5017882	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs5017883	0.99[ASN][1000 genomes]
rs5017884	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs5017885	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5017886	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5017887	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7134094	0.87[ASN][1000 genomes]
rs7138292	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7297667	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7300903	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7305724	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7312942	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7313246	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs935537	0.80[CEU][hapmap];0.83[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.85[LWK][hapmap];0.86[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs10219684	STYK1	cis	cerebellum	SCAN
rs10219684	C12orf33	cis	cerebellum	SCAN
rs10219684	KLRG1	cis	parietal	SCAN
rs10219684	MFAP5	cis	parietal	SCAN
rs10219684	CLEC2A	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10025600-10033400	Weak transcription	Primary hematopoietic stem cells	blood

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