Variant report

Variant	rs10219697
Chromosome Location	chr12:57051623-57051624
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:57036892..57041043-chr12:57050765..57055659,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110955	Chromatin interaction
ENSG00000207031	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11171906	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11171912	1.00[EUR][1000 genomes]
rs11171913	1.00[EUR][1000 genomes]
rs11171939	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11472	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12306723	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12308290	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12313811	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12318580	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12321709	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2230580	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58594693	1.00[AMR][1000 genomes]
rs73335264	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73335265	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73335300	1.00[EUR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57039800-57055800	Weak transcription	Gastric	stomach
2	chr12:57039800-57059200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:57040400-57056200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr12:57040400-57059200	Weak transcription	Aorta	Aorta
5	chr12:57040400-57059400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr12:57040400-57069400	Weak transcription	Right Atrium	heart
7	chr12:57040600-57054600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr12:57040600-57056400	Weak transcription	Brain Substantia Nigra	brain
9	chr12:57040600-57056400	Weak transcription	Colonic Mucosa	Colon
10	chr12:57040600-57056400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr12:57040600-57056800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr12:57040600-57058200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr12:57040600-57058200	Weak transcription	Colon Smooth Muscle	Colon
14	chr12:57040600-57058800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr12:57046200-57051800	Weak transcription	Spleen	Spleen
16	chr12:57046200-57059400	Weak transcription	Lung	lung
17	chr12:57047000-57055600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr12:57048000-57055600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr12:57048800-57056800	Weak transcription	Dnd41	blood
20	chr12:57049400-57056200	Weak transcription	Fetal Muscle Leg	muscle
21	chr12:57049800-57056200	Weak transcription	Left Ventricle	heart
22	chr12:57050200-57055800	Weak transcription	Fetal Stomach	stomach
23	chr12:57050800-57054200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr12:57051200-57052000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr12:57051200-57053200	Enhancers	GM12878-XiMat	blood
26	chr12:57051400-57056600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr12:57051400-57056800	Weak transcription	HSMM	muscle
28	chr12:57051400-57057800	Weak transcription	Brain Cingulate Gyrus	brain
29	chr12:57051400-57058000	Weak transcription	Brain Hippocampus Middle	brain
30	chr12:57051400-57058400	Weak transcription	Brain Angular Gyrus	brain
31	chr12:57051400-57058600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr12:57051600-57051800	Enhancers	A549	lung
33	chr12:57051600-57054800	Weak transcription	Fetal Thymus	thymus
34	chr12:57051600-57056400	Weak transcription	Primary T helper cells PMA-I stimulated	--

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